Zaphod
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001123 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 4079 |
| Kimura value | 23.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod subfamily |
| Comment | ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCATATCACAAACACACAAAAAATAAATTTATTAAAGAACACATGGGCGCCTCTGTCACTCGGGATCCGGCGCTCAGCGCTGGCACAGCGCGACCCGTAACCCTAAACATCCGCTCTCGTGACTAACACCGTTCAGGCCCCAGGGAAACGCTTCTCCACATCTCTTGCCCTATGTCCTCGAAACAAAAGGCGACTGCGTCCGAATGCCGTGAAGGTTTGTGGGTTGTGCCGCTGCCGACGTCGGAGACGGACACTGCTTCGGAGTGCGGGGAGGATTTGAGCGGCGGAAGCGCTTAGGTAAGAGAAAAGACAAATTAATTAACTTGTCAAATCCTTCCTCTCAGATAGCATGAATGCAATAGATTCTTGCATAACGAAGTATCGTTTCCCAGTAGTGCCGAGCGTCCATTTTCTTGCTTCTCTTCGTGTTCCAATTCGTGGTTCCGGAGGTACTCACGAATTAGCGCGGTATTCGCAACAGTTGCACATGGCGGCTGAGGAACATTTTGCAATATTAAACAATTCATATTACTCTTAAATTTGTATATATGTAGGTCTAGACGTAACATGCGTGAAGCGTGATACCGATTCTTTACATTGGCAACTAGATGGACATTGAACGCTAGAATTGCGAATAGTTTTATTTTTATAAAAATATTTAATAAGATTTAATTAAATTTTCAAAAAATTAAATAAAAATTTCAGCTTTATTTAAATAATTTTGATTTAAAATTTTGATATTCATTAATTATAATTTGTATTTTGCCTTTTAATTTTAATAGATAATTTTGAATATTTTAGAAGAAAAATAACTTTTGAAAACATATGAAAATATTTTAATTTTTACATTTACTTTAATTTACATTTTTGATGAAAATATATTCAAATTTTGTACACTTTGAATACAATTACATTTTATTTTTTAATCCTTTAGATCATTGAGAATGAGTACAAGTCGAGATCGTGATAGAAATAGAAAATATAAAAGTGGAGCTCAGAAAAGAAAAAAAGCTGAAAAGAAAAAAGAAATAGAAAATCTTCAAAGAGGCGGTCTGCTTAAATTTTTAAAAACTGGAAACAATGAAAGTGAGCAGACTTCTGTCGAGCATGACCCACATAAAATTCGCGAACAGGACATTACAAATTCTTTATTTAATGAAGATTTAATTACTGATCAAAACAATGAAAATGAGCAAGAAAATTATTCTCATCAAATCCACAACTCGAACAGGTCAGATGAAATCCCTGCAACTTCATATTCTTTACTAAATGAAGATTTAATTACTGATCAAAACAATGAGAATGAAAAAGAGAATTATTCATATCAAATTCACAACTCAGAAGCAACAAATGCAACTCTGGCCTGCCCATTAGAAGATGAAGAAAATTACATTCATGAAATCGGCAAATTGGACGAGAAAGACGAAACCTCCGGAGCTTTACTATGTTTATTGGATGATGATCCTGGAAAACGGCCGTCACGTCCTTCTGACAGCGTGAGAATGTTTCTAGCAAAACACAATCTGATTCAAATTAATGATTACGATTTTCCATTGGATGAACATGGCAGAAAATTTAGTATTTCATTTTACACCAAAATTCTTTCAAATGGAGAAAGAAACTGTAGAAANTGGCTTTTATATTCTAAGTTCAAAGACAAAGTATTTTGTTACTACTGTTACATGTTTCACAACCAATCTTCAAGATCAGCTTTGGCCAATGAAGGTATTTGTGACTGGAAACACTTAGGTTCTCGATTAAAAGAACACGAAACGTCACTTGCACACAAAAAAGCACACATGCAATTACTAGAACTGAAAAAAAGGCTGAATAAACAGCAAACAATCGATAGTATTCAACAAAGACAAGTAAACGCCGATATAGAACATTGGCGTGATGTTCTTAAAAGAATAATATTATGTGTCCAATATTTAGCCAAGCATAATGATGCTTTTCGTGGCACTAACAGCACAATATTTACAGAAAACAATGGAAAATTTCTAGGTTTAGTAGAAATGATTTCGAAATTTGATGCTAGAATGGCCGAACATGTAAGACGGATAAAAAATAATGAAACAAATGATCACTATCTAGGATGGAGAATTCAAAATGAGATTATTAATTTAATGGGTAATAAAGTGAGAGAAGAAATCATACATAANAATTTAAAAAGTAAATATTACTCAGTTCAACTAGATTGTANCAGGGACAAAAGTCACGTTGAACAACTAACATTTATTATACGTATTGTTGAACTACCAGAAGAAGAAAACAAGAAAGTCGAAATTAATGAGTATTTCATTGGTTTTACACCTGTTGTAAAAAGTACAGGTTTTGACTTAAGTGAAGAACTGAAAAAACAACTTTCAATTTTAGGCATTGATTTAAAAGATTGTCGAGGGCAAGCCTATGATAATGGCGCTAACATGGTTGGTAAAGAAAAAGGTGTACAAGCCAGAATTTTGGCCGAAAATCCAGAAGCATTCTTTGTGCCATGTACGGCGCATAGTTTGAATTTGTTACTAGGAGACGTGGCCTCAACTGTGCCAATAGCGATGACATTCTTTGGAACAATTCAAAGATTATATACGATATTTTCTGGATCTGCCCAAAGATGGAACATCTTGATGAAACACATATCAAATTTGACCTTACAACCACTCTCGGACACACGATGGGAATGCCGACTAAATGCTGTTAAAGCAATTAGATTTAATTTAGACAAGATACGAGATGCACTAGAAGAGTTAAGCGAAACAACAGAAGATCCTCAAATAAAGAGCGAATCGTGGTCTTTGGCGGAAAATGAAATTAATTTTGAATTTGCGCTATCCACAGTTATTTGGTATGAACTGTTGCTTGCTATTAATAATGTTAGCAAAAGCTTACAAAAAANCAACAGATCTAAGTTTGGCTATTTCACTTTTAAAAGGATTAAAAATATTTTTTNAAATTTTAGAGAAAATGGTTTTTCTAAATCGAAAGAAACTGCATGTGAAATATGCAACAAAAGTGACATTCCAATAAAATATAAGGAAATTAGAACAAGGAAACGAAAACGTTTGCATGACTATGAAGGAGAAGATTCACGTACAAATAATCCCGAAACTAATTTCTATAGAGACTATTTTCTGGCCATTATAGATCAAGGTATAGTCTCGATTGAAGAGAGATTTGAACAAATTGAGCAACATACTGCTATTTTCGGTTTTCTTTATAATATCCCAGCATTGAAAAATTTGAAAGAAGAAGAACTTAAGAAATACTGTATGGATCTAGATATTGCTTTAAGAGACGGTGAAAATCGCGATATAAGTGATAGCGATTTATATGATGAAATTAAAATATTTTGTAATATTTTCTGCGATAATGATAATTTATCATATGCGACCCCATTACAATGTTTGAACATGATATGTAAAATTCATGGTTCATTTCCGAATCTAAGTATTGCTTTAAGAATTTTATTGACAATTCCAGTTGCTACTGCCTCAGCAGAGCGAAGTTTCTCCAAATTGAAATTAATAAAAAACTATCTAAGAACTACAATGACTCAAGAAAGGTTGTCTAATTTGGCATTACTGTCAATAGAACACAAATTATGTGAAAATCTTGATTATAACAACATAATTAGTGATTTTGCTGAAATGAAGGCAAGAAAAATAAATTTTATGGAATAAATATATAATAATTTATGAATTATGTATGTCTTTATTTTATTACTCATCCAAACATCGCCGGCCCATCAACAGAACACCCAGACATGCGCAATAATAATTAAATTCAGTCGTCTTTGATATTTTGCCGACTTTCAGTCATATAAAAACCATAGCTTTACACATATTTTTCAATTTTGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod | Lhx3 | 377 | 388 | + | 17.78 | AAATTAATTAAC |
| Zaphod | DOF3.4 | 1071 | 1087 | - | 17.76 | TTTCTTTTCAGCTTTTT |
| Zaphod | JKD | 3917 | 3928 | + | 17.74 | TTTTGTCGTTAT |
| Zaphod | NUC | 3917 | 3928 | + | 17.59 | TTTTGTCGTTAT |
| Zaphod | ROX1 | 2048 | 2059 | - | 17.50 | TCCATTGTTTTC |
| Zaphod | PI | 2324 | 2337 | + | 17.48 | CCAGAAGAAGAAAA |
| Zaphod | SGR5 | 368 | 380 | + | 17.42 | AGAAAAGACAAAT |
| Zaphod | DOF5.8 | 1079 | 1097 | - | 17.39 | CTATTTCTTTTTTCTTTTC |
| Zaphod | DOF5.1 | 1079 | 1097 | + | 17.20 | GAAAAGAAAAAAGAAATAG |
| Zaphod | ZNF574 | 21 | 34 | + | 17.03 | GGCAAGAGGGGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
