X9b_DNA
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001146 |
|---|---|
| TE superfamily | Tigger |
| TE class | DNA |
| Species | Mammalia |
| Length | 1018 |
| Kimura value | 32.88 |
| Tau index | 0.9816 |
| Description | Putative TcMar-Tigger DNA transposon, X9b_DNA subfamily (non-autonomous) |
| Comment | Incomplete reconstruction. Found in placental and marsupial mammals; uncertain identification in platypus. |
| Sequence |
TACTCAGAACCCTCAAGTAATTNCGGCAAAGTCGGAANTNCAGATTAAAAGCTGAAGAGAGCCTGCGNAGCCCAGAAGACCCAAAGATCTGCATTCAAAAGCTGCCTGTCTGAAGCCTTCAGACAAAAGAAAAAAGCTTCAGAAGTCACTTTGAAAGACTTTACATATGTTAATTACAGCCATCAAGGGTCATAAAGCAGGGAAGAGAAACCTCGGTCTGAGGCTATGCCGGTCCACAGCAAGTACAGTAAAATCTTTGTTATCTGGGGGGTGCAGGTTAGGTTAACTAAAAGTTTTATTTAACCCATTTACCTGTCATTTCCCAAGAACTTCTGAAGCTTTCTGCTTTCTACCTCTGTGCTTTCAACCTATAGAAACTACAGTTTTGATCTGAGGAAAAAAATTGATTCAGCCTCTAGTCTAGGTTTATTCTGCTAGCTAAGAGATCCAGAGGCAACTTCAGATTTACATTTCTATCACTGCCTCTCTAAACCTGATTACTTTAACAAGTACTTTCCAATTGCCCCATTGTTTTTCAGAACCACCTCTAGCTTCTTACATTTCTAATCAAACTTTATTTTTGAAATACCTGTCATTTCTCATGGACTTCTGAAGCTTTCTGCTTTCTACCTGTGTGAAGTTTTGGGGAAAGATTTTATTTTTCCCTCTAGGTTTATTCTGCTTAGCTAAAGTCATCAGAGACAACTTTAACTTTGTATTTTTATGAGGCCTCTTTCAAAGTGTGTTGACACTGCGGTTGATGGTCTGGTTACTAGATTGAAGATTTGTGGTTGGTAAAGTGCTGTATTTCTAAAAATACATAATTGAGAGATCAACCAATACAATTGTGCACACCTGAAAGAAGATTCCAGAGGCACAGGTCCCTATATCCTATGCAGGGGCGTCCTTGCCTCGGGCAGTTTCACTGCATAAATGGGTTAACCCTCAGTTAACCAGAAAATTCAGTTAACCAGAACACCCCATTCCCCGANCATTCTAGTTAACTGAGGTTTTACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| X9b_DNA | run | 752 | 759 | - | 14.13 | AACCGCAG |
| X9b_DNA | HHO2 | 863 | 870 | + | 14.10 | AAGATTCC |
| X9b_DNA | TFAP2E | 910 | 918 | - | 14.04 | GCCCGAGGC |
| X9b_DNA | TFAP2E | 910 | 918 | + | 14.02 | GCCTCGGGC |
| X9b_DNA | Tbx15/18/22 | 739 | 752 | + | 13.99 | AAGTGTGTTGACAC |
| X9b_DNA | fru | 497 | 504 | - | 13.80 | AAAGTAAT |
| X9b_DNA | HOXC13 | 720 | 728 | - | 13.76 | CTCATAAAA |
| X9b_DNA | Zm00001d027846 | 126 | 133 | + | 13.75 | AAAGAAAA |
| X9b_DNA | fkh-3 | 533 | 540 | - | 13.74 | TCTGAAAA |
| X9b_DNA | Stat6 | 320 | 329 | - | 13.74 | TTCTTGGGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
