X9b_DNA
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001146 |
|---|---|
| TE superfamily | Tigger |
| TE class | DNA |
| Species | Mammalia |
| Length | 1018 |
| Kimura value | 32.88 |
| Tau index | 0.9816 |
| Description | Putative TcMar-Tigger DNA transposon, X9b_DNA subfamily (non-autonomous) |
| Comment | Incomplete reconstruction. Found in placental and marsupial mammals; uncertain identification in platypus. |
| Sequence |
TACTCAGAACCCTCAAGTAATTNCGGCAAAGTCGGAANTNCAGATTAAAAGCTGAAGAGAGCCTGCGNAGCCCAGAAGACCCAAAGATCTGCATTCAAAAGCTGCCTGTCTGAAGCCTTCAGACAAAAGAAAAAAGCTTCAGAAGTCACTTTGAAAGACTTTACATATGTTAATTACAGCCATCAAGGGTCATAAAGCAGGGAAGAGAAACCTCGGTCTGAGGCTATGCCGGTCCACAGCAAGTACAGTAAAATCTTTGTTATCTGGGGGGTGCAGGTTAGGTTAACTAAAAGTTTTATTTAACCCATTTACCTGTCATTTCCCAAGAACTTCTGAAGCTTTCTGCTTTCTACCTCTGTGCTTTCAACCTATAGAAACTACAGTTTTGATCTGAGGAAAAAAATTGATTCAGCCTCTAGTCTAGGTTTATTCTGCTAGCTAAGAGATCCAGAGGCAACTTCAGATTTACATTTCTATCACTGCCTCTCTAAACCTGATTACTTTAACAAGTACTTTCCAATTGCCCCATTGTTTTTCAGAACCACCTCTAGCTTCTTACATTTCTAATCAAACTTTATTTTTGAAATACCTGTCATTTCTCATGGACTTCTGAAGCTTTCTGCTTTCTACCTGTGTGAAGTTTTGGGGAAAGATTTTATTTTTCCCTCTAGGTTTATTCTGCTTAGCTAAAGTCATCAGAGACAACTTTAACTTTGTATTTTTATGAGGCCTCTTTCAAAGTGTGTTGACACTGCGGTTGATGGTCTGGTTACTAGATTGAAGATTTGTGGTTGGTAAAGTGCTGTATTTCTAAAAATACATAATTGAGAGATCAACCAATACAATTGTGCACACCTGAAAGAAGATTCCAGAGGCACAGGTCCCTATATCCTATGCAGGGGCGTCCTTGCCTCGGGCAGTTTCACTGCATAAATGGGTTAACCCTCAGTTAACCAGAAAATTCAGTTAACCAGAACACCCCATTCCCCGANCATTCTAGTTAACTGAGGTTTTACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| X9b_DNA | GATA1::TAL1 | 260 | 276 | + | 18.73 | TTATCTGGGGGGTGCAG |
| X9b_DNA | Irf-b | 374 | 388 | + | 16.37 | GAAACTACAGTTTTG |
| X9b_DNA | HSFA1E | 861 | 874 | + | 16.30 | AGAAGATTCCAGAG |
| X9b_DNA | PHL1 | 859 | 870 | + | 15.86 | AAAGAAGATTCC |
| X9b_DNA | ZBTB32 | 242 | 251 | + | 15.45 | AGTACAGTAA |
| X9b_DNA | D | 525 | 535 | + | 15.44 | CCCATTGTTTT |
| X9b_DNA | STAT1::STAT2 | 200 | 212 | - | 15.42 | GGTTTCTCTTCCC |
| X9b_DNA | Sox7 | 526 | 535 | - | 15.33 | AAAACAATGG |
| X9b_DNA | POU3F2 | 165 | 176 | + | 15.29 | ATATGTTAATTA |
| X9b_DNA | ROX1 | 525 | 536 | + | 15.21 | CCCATTGTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
