X9b_DNA
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001146 |
|---|---|
| TE superfamily | Tigger |
| TE class | DNA |
| Species | Mammalia |
| Length | 1018 |
| Kimura value | 32.88 |
| Tau index | 0.9816 |
| Description | Putative TcMar-Tigger DNA transposon, X9b_DNA subfamily (non-autonomous) |
| Comment | Incomplete reconstruction. Found in placental and marsupial mammals; uncertain identification in platypus. |
| Sequence |
TACTCAGAACCCTCAAGTAATTNCGGCAAAGTCGGAANTNCAGATTAAAAGCTGAAGAGAGCCTGCGNAGCCCAGAAGACCCAAAGATCTGCATTCAAAAGCTGCCTGTCTGAAGCCTTCAGACAAAAGAAAAAAGCTTCAGAAGTCACTTTGAAAGACTTTACATATGTTAATTACAGCCATCAAGGGTCATAAAGCAGGGAAGAGAAACCTCGGTCTGAGGCTATGCCGGTCCACAGCAAGTACAGTAAAATCTTTGTTATCTGGGGGGTGCAGGTTAGGTTAACTAAAAGTTTTATTTAACCCATTTACCTGTCATTTCCCAAGAACTTCTGAAGCTTTCTGCTTTCTACCTCTGTGCTTTCAACCTATAGAAACTACAGTTTTGATCTGAGGAAAAAAATTGATTCAGCCTCTAGTCTAGGTTTATTCTGCTAGCTAAGAGATCCAGAGGCAACTTCAGATTTACATTTCTATCACTGCCTCTCTAAACCTGATTACTTTAACAAGTACTTTCCAATTGCCCCATTGTTTTTCAGAACCACCTCTAGCTTCTTACATTTCTAATCAAACTTTATTTTTGAAATACCTGTCATTTCTCATGGACTTCTGAAGCTTTCTGCTTTCTACCTGTGTGAAGTTTTGGGGAAAGATTTTATTTTTCCCTCTAGGTTTATTCTGCTTAGCTAAAGTCATCAGAGACAACTTTAACTTTGTATTTTTATGAGGCCTCTTTCAAAGTGTGTTGACACTGCGGTTGATGGTCTGGTTACTAGATTGAAGATTTGTGGTTGGTAAAGTGCTGTATTTCTAAAAATACATAATTGAGAGATCAACCAATACAATTGTGCACACCTGAAAGAAGATTCCAGAGGCACAGGTCCCTATATCCTATGCAGGGGCGTCCTTGCCTCGGGCAGTTTCACTGCATAAATGGGTTAACCCTCAGTTAACCAGAAAATTCAGTTAACCAGAACACCCCATTCCCCGANCATTCTAGTTAACTGAGGTTTTACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| X9b_DNA | Sox6 | 526 | 535 | + | 15.04 | CCATTGTTTT |
| X9b_DNA | Sox17 | 526 | 535 | - | 15.02 | AAAACAATGG |
| X9b_DNA | TFAP2B | 910 | 918 | - | 14.67 | GCCCGAGGC |
| X9b_DNA | HSFA6A | 862 | 874 | + | 14.43 | GAAGATTCCAGAG |
| X9b_DNA | Sox5 | 526 | 533 | - | 14.38 | AACAATGG |
| X9b_DNA | ZNF766 | 423 | 431 | - | 14.38 | AATAAACCT |
| X9b_DNA | ZNF766 | 670 | 678 | - | 14.38 | AATAAACCT |
| X9b_DNA | HRS1 | 859 | 870 | + | 14.36 | AAAGAAGATTCC |
| X9b_DNA | MYB51 | 789 | 799 | - | 14.34 | TTTACCAACCA |
| X9b_DNA | MYB40 | 790 | 799 | - | 14.30 | TTTACCAACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
