MIR1_Amn
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001253 |
|---|---|
| TE superfamily | L2-end |
| TE order | SINE |
| Species | Amniota |
| Length | 230 |
| Kimura value | 29.82 |
| Tau index | 0.6159 |
| Description | MIR-like SINE. |
| Comment | - |
| Sequence |
TAGGGAGGCAGTGTGGTCTAGTGGATAGAGCACTGGACTGGGACTCGGGAGACCTGGGTTCNANTCCCGGCTCTGCCACTNGCCNGCTGNGTGACCTTGGGCAAGTCACTTNACCTCTCTGNGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATGATACTGACCTCCTTTGTAAAGTGCTTTGAGATCTACTGATGAAAAGTGCTACATAAGAGCTAGGTATTATTAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MIR1_Amn | AP1 | 130 | 142 | - | 11.35 | ACAGATGAGGAAA |
| MIR1_Amn | CDF3 | 198 | 205 | + | 11.26 | GAAAAGTG |
| MIR1_Amn | Gli1 | 10 | 19 | - | 11.25 | AGACCACACT |
| MIR1_Amn | ZAT10 | 71 | 80 | + | 11.18 | CTCTGCCACT |
| MIR1_Amn | ftz-f1 | 93 | 100 | + | 10.94 | GACCTTGG |
| MIR1_Amn | Eip75B | 162 | 171 | - | 10.89 | AAGGAGGTCA |
| MIR1_Amn | Yy1 | 142 | 149 | + | 10.87 | TAAAATGG |
| MIR1_Amn | ZBTB24 | 49 | 58 | - | 10.54 | CCCAGGTCTC |
| MIR1_Amn | THRB | 92 | 108 | - | 10.42 | TGACTTGCCCAAGGTCA |
| MIR1_Amn | KLF17 | 4 | 17 | - | 10.38 | ACCACACTGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
