MIR1_Amn
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001253 |
|---|---|
| TE superfamily | L2-end |
| TE order | SINE |
| Species | Amniota |
| Length | 230 |
| Kimura value | 29.82 |
| Tau index | 0.6159 |
| Description | MIR-like SINE. |
| Comment | - |
| Sequence |
TAGGGAGGCAGTGTGGTCTAGTGGATAGAGCACTGGACTGGGACTCGGGAGACCTGGGTTCNANTCCCGGCTCTGCCACTNGCCNGCTGNGTGACCTTGGGCAAGTCACTTNACCTCTCTGNGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATGATACTGACCTCCTTTGTAAAGTGCTTTGAGATCTACTGATGAAAAGTGCTACATAAGAGCTAGGTATTATTAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MIR1_Amn | AT3G10580 | 146 | 159 | + | 12.47 | ATGGGGATAATGAT |
| MIR1_Amn | AGL15 | 130 | 145 | + | 12.20 | TTTCCTCATCTGTAAA |
| MIR1_Amn | GATA11 | 185 | 192 | - | 12.02 | TAGATCTC |
| MIR1_Amn | DMRTC2 | 201 | 211 | + | 12.02 | AAGTGCTACAT |
| MIR1_Amn | YPR013C | 187 | 193 | - | 11.88 | GTAGATC |
| MIR1_Amn | RORC | 162 | 171 | - | 11.85 | AAGGAGGTCA |
| MIR1_Amn | AG | 130 | 145 | + | 11.79 | TTTCCTCATCTGTAAA |
| MIR1_Amn | PI | 129 | 142 | - | 11.67 | ACAGATGAGGAAAC |
| MIR1_Amn | GATA10 | 185 | 192 | - | 11.54 | TAGATCTC |
| MIR1_Amn | abi4 | 4 | 13 | - | 11.39 | CACTGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
