MIR1_Amn
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001253 |
|---|---|
| TE superfamily | L2-end |
| TE order | SINE |
| Species | Amniota |
| Length | 230 |
| Kimura value | 29.82 |
| Tau index | 0.6159 |
| Description | MIR-like SINE. |
| Comment | - |
| Sequence |
TAGGGAGGCAGTGTGGTCTAGTGGATAGAGCACTGGACTGGGACTCGGGAGACCTGGGTTCNANTCCCGGCTCTGCCACTNGCCNGCTGNGTGACCTTGGGCAAGTCACTTNACCTCTCTGNGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATGATACTGACCTCCTTTGTAAAGTGCTTTGAGATCTACTGATGAAAAGTGCTACATAAGAGCTAGGTATTATTAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MIR1_Amn | NR2F2 | 92 | 98 | - | 13.14 | AAGGTCA |
| MIR1_Amn | AGL16 | 130 | 144 | + | 13.12 | TTTCCTCATCTGTAA |
| MIR1_Amn | nhr-25 | 92 | 99 | - | 13.07 | CAAGGTCA |
| MIR1_Amn | Nr5A2 | 92 | 100 | + | 12.96 | TGACCTTGG |
| MIR1_Amn | ZNF331 | 68 | 77 | - | 12.91 | GGCAGAGCCG |
| MIR1_Amn | Ppara | 92 | 98 | - | 12.88 | AAGGTCA |
| MIR1_Amn | svp | 92 | 98 | - | 12.82 | AAGGTCA |
| MIR1_Amn | ZSCAN21 | 177 | 183 | - | 12.61 | AAGCACT |
| MIR1_Amn | RORA | 162 | 171 | - | 12.60 | AAGGAGGTCA |
| MIR1_Amn | RORB | 162 | 171 | - | 12.54 | AAGGAGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
