ERV3-16A3_LTR
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000117 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 422 |
| Kimura value | 26.96 |
| Tau index | 0.9781 |
| Description | Long terminal repeat, ERV3-16A3_LTR subfamily |
| Comment | Associated with ERV3-16A3_I. |
| Sequence |
TGTGGCAGCCACGGAGGTGCGCCGCTCGGATCTCCCTTCAAGAAAGAACTTGCCGTTCAGCTGCGAGGAGTGCGGTTAGCTGACAGCCTCCAGCTGTTAGCGCCTTCAGGATCCGCCTCAGCTTTCGAGCCGAGGCCACGCTCTTCCCGGGCAGCCCCCAGCCAATGACTGAGCANGGCGGGGGTACNAGGGCCTGGCCATTTCTGCCCAACGCGGGACTCCTCTAACGGGCAATCTTTGCTCCGGAAGAGCTCCCCGTTGGGTTGGCCGAGACTTTGTCAGATCTGCATCGCGGTCTGAGGCTCTCCCTGCCCAATCCTGCTTCCTCTCCTTTTNTCTTTCACAGGCGTTACCCCCCAATAAACCTCTTGCACTCCTAACTCCGTCTCAGCGTCTGCTTCCCGGAGGACCCAACTGACACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV3-16A3_LTR | ZNF549 | 149 | 156 | - | 12.72 | GGCTGCCC |
| ERV3-16A3_LTR | GATA6 | 281 | 290 | + | 12.70 | AGATCTGCAT |
| ERV3-16A3_LTR | NAC004 | 39 | 45 | + | 12.69 | CAAGAAA |
| ERV3-16A3_LTR | TFAP2B | 154 | 164 | + | 12.67 | GCCCCCAGCCA |
| ERV3-16A3_LTR | Eip74EF | 243 | 249 | + | 12.66 | CCGGAAG |
| ERV3-16A3_LTR | YLR278C | 379 | 385 | - | 12.66 | CGGAGTT |
| ERV3-16A3_LTR | Ptf1A | 90 | 97 | - | 12.51 | ACAGCTGG |
| ERV3-16A3_LTR | Ptf1A | 90 | 97 | + | 12.51 | CCAGCTGT |
| ERV3-16A3_LTR | MSC | 89 | 98 | + | 12.48 | TCCAGCTGTT |
| ERV3-16A3_LTR | ZNF770 | 84 | 91 | + | 12.47 | CAGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
