ERV3-16A3_LTR
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000117 |
|---|---|
| TE superfamily | ERV3 |
| TE order | LTR |
| Species | Eutheria |
| Length | 422 |
| Kimura value | 26.96 |
| Tau index | 0.9781 |
| Description | Long terminal repeat, ERV3-16A3_LTR subfamily |
| Comment | Associated with ERV3-16A3_I. |
| Sequence |
TGTGGCAGCCACGGAGGTGCGCCGCTCGGATCTCCCTTCAAGAAAGAACTTGCCGTTCAGCTGCGAGGAGTGCGGTTAGCTGACAGCCTCCAGCTGTTAGCGCCTTCAGGATCCGCCTCAGCTTTCGAGCCGAGGCCACGCTCTTCCCGGGCAGCCCCCAGCCAATGACTGAGCANGGCGGGGGTACNAGGGCCTGGCCATTTCTGCCCAACGCGGGACTCCTCTAACGGGCAATCTTTGCTCCGGAAGAGCTCCCCGTTGGGTTGGCCGAGACTTTGTCAGATCTGCATCGCGGTCTGAGGCTCTCCCTGCCCAATCCTGCTTCCTCTCCTTTTNTCTTTCACAGGCGTTACCCCCCAATAAACCTCTTGCACTCCTAACTCCGTCTCAGCGTCTGCTTCCCGGAGGACCCAACTGACACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV3-16A3_LTR | MYB88 | 138 | 146 | + | 13.38 | ACGCTCTTC |
| ERV3-16A3_LTR | NFYB | 160 | 168 | - | 13.33 | TCATTGGCT |
| ERV3-16A3_LTR | GRF6 | 277 | 283 | - | 13.30 | TCTGACA |
| ERV3-16A3_LTR | INO4 | 340 | 348 | - | 13.23 | GCCTGTGAA |
| ERV3-16A3_LTR | Tfcp2l1 | 308 | 321 | + | 13.15 | CCTGCCCAATCCTG |
| ERV3-16A3_LTR | ZBTB7A | 243 | 251 | + | 13.11 | CCGGAAGAG |
| ERV3-16A3_LTR | TFAP4::ETV1 | 392 | 404 | - | 13.07 | CGGGAAGCAGACG |
| ERV3-16A3_LTR | HAP3 | 160 | 168 | - | 13.04 | TCATTGGCT |
| ERV3-16A3_LTR | GRF9 | 277 | 283 | + | 13.03 | TGTCAGA |
| ERV3-16A3_LTR | NAC053 | 39 | 45 | + | 13.01 | CAAGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
