ERV3-16A3_LTR
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000117 |
|---|---|
| TE superfamily | ERV3 |
| TE order | LTR |
| Species | Eutheria |
| Length | 422 |
| Kimura value | 26.96 |
| Tau index | 0.9781 |
| Description | Long terminal repeat, ERV3-16A3_LTR subfamily |
| Comment | Associated with ERV3-16A3_I. |
| Sequence |
TGTGGCAGCCACGGAGGTGCGCCGCTCGGATCTCCCTTCAAGAAAGAACTTGCCGTTCAGCTGCGAGGAGTGCGGTTAGCTGACAGCCTCCAGCTGTTAGCGCCTTCAGGATCCGCCTCAGCTTTCGAGCCGAGGCCACGCTCTTCCCGGGCAGCCCCCAGCCAATGACTGAGCANGGCGGGGGTACNAGGGCCTGGCCATTTCTGCCCAACGCGGGACTCCTCTAACGGGCAATCTTTGCTCCGGAAGAGCTCCCCGTTGGGTTGGCCGAGACTTTGTCAGATCTGCATCGCGGTCTGAGGCTCTCCCTGCCCAATCCTGCTTCCTCTCCTTTTNTCTTTCACAGGCGTTACCCCCCAATAAACCTCTTGCACTCCTAACTCCGTCTCAGCGTCTGCTTCCCGGAGGACCCAACTGACACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV3-16A3_LTR | Rel | 149 | 159 | - | 5.51 | GGGGGCTGCCC |
| ERV3-16A3_LTR | ZNF16 | 240 | 260 | - | 3.35 | AACGGGGAGCTCTTCCGGAGC |
| ERV3-16A3_LTR | SNT2 | 95 | 104 | + | 3.17 | TGTTAGCGCC |
| ERV3-16A3_LTR | TP63 | 37 | 54 | - | -1.38 | GGCAAGTTCTTTCTTGAA |
| ERV3-16A3_LTR | E2F7 | 349 | 362 | + | -4.74 | GTTACCCCCCAATA |
| ERV3-16A3_LTR | EWSR1-FLI1 | 314 | 331 | - | -11.45 | GGAGAGGAAGCAGGATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
