ERV24B_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000114 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7613 |
| Kimura value | 24.25 |
| Tau index | 0.5256 |
| Description | ERV1 retrotransposon, ERV24B_Prim subfamily |
| Comment | Autonomous ERV with LTR24B LTRs. ORFs: (roughly) gag 894-2234, pol 2235-5930, env 5962-6642. |
| Sequence |
TTTTGGCGACCCAGATGGGACCCGAAGCGAGCCTTCCGTCGATCCCCGCCGCTTCGCCGACAGCCGGGGCCCTGGTACCAGCACGAACGGCTTTCGTTCACCCGACCTCGCCGGAGCCGGCGGGGGTCTCTGGCGAGGCTCCTCTCGGGTTTCGAATCTCCCTGGTTTTGGCTGAGATTCAGACTTTATTCAAGCGACCCGATTCCACGCTCGACGGAGCTGGAATTGAAGCTCTACTGCTTTAAGGTAGGAGTTTCGTTTGTTATTTCTCTAGAGATTCTGCTGTTTGCAGGTTTGTGGTTTCACTTTTCTTTGAGGTTAAGGTTTTGTTTGTCTTACTTGCTAAAGTTTTGCAACCTTTTCTCTCGTTCGAAATTTGGTCAAGGAGAAAACAGTTTCTCTTTGAAAAGAGGAAGTGAATNTCTGTGGCTTAAGCAAAATTTGTGATCTTTAAAACTGGCCAGGTTCTGAAGCTCGGTTCAATTGACATATCTAAANTCTCTTCTTGAGTGACCAAAATTANAAAAAGCTTTCTATGAGGACGTGATAAGTCCCGAAGATAAGGGACACTGTTCCTCCCGGCCGAAAGGCACCTTAGGCGACTAAGGTCTCGCGGGAGTGTCGGAGCTCATCGCTCGTGACGTGCAACGGTCCCATAGGGAATCCCCAAAGAAGAACATACAGGGAANTTTGCTTAACCCGGTGGGCACACATAAGGGGCTGATCTCCCAGTGCCTTAAGCGCCCAGGATTCCTGGGTTTCACCGAGACACGTAAGAGGGGAGAAGCGACTCANGGGTGACACCTCGAGGAGTNATNCCCATTAAGCAGCACACTTGACCCAAAACATCTTTCCCTTTCAGTCTTTGGTCACTTAAGAAGAGAACCCAAATTATGGGCAATCGNCCATCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCTTTAGAAACNCCAGCTGGNTTTATGTACAACACTTATGGNGCCNCCTCTTGTAAATATCTAGGAAAATGGNCTCACNTAACCCGNGAAGANCCNAAATTACAATGGCCAAAATGGGGTACCTTTGAAATGCCTAAANTAATTTATTTGCGTGCNCAATTAGAAAAAGCCGGCTCTAGAATNAAACAAAATAANTGGGAGANTTACTTCCAATGGTACTTAGAAGCNTCCAAAAGAGGTTCTGANAAAGTTGCTTCCTTNCAGGAAGNAAACAAAAAGNTGTCTAAAACNATTTCTGAATTTAAAAAGACTGCTGAAGCTTCTCCTCCTCCTCCCTCAGCTCCTCCTTCTCTTTACCCTTTATTGTCTGAACTACCTTGCCCNGACCTACCTTCTCTTCCTCCTCCTCCTCCTGCTCCTGCTGTTCTGGCTCCATTTCNCGAACAGCCAGTGTCTGGTAGGGGAGAACCTGCCTTAGTTTATCAACCATGGTCAAAGGTAGAACTTAAAGGCATAATTAAGGAATTTCCTGATCCTCACCAGGACCCTATTGGTTTTGCCAGGGAATTTGAATTAAATATTCGAGCTTATGACCCTGGCTTTTCTGATTTNTATCAACTAGTTCACATGTTAGTNTCAGAAAGCAAGGCTAAAGATTGGNTAGATAAGGCNNACTGGAGAAATCCCTTAGAGGATTTTCATAAATGTTCAGAAGAAGACCGCAGACGTGCCCGTGAAACTGCAAAGGCTCTGCNTGAAGCCATTCCTTNAGTCTTCCAAAAGGTAGTNGACTGGAANAAAATACAACAATGTCGACAAAATCCAGATGAGTCNGTGATGNCATATTTTGAAAGATTTGAAAAAACNTTTAAACAATATTCAGGNTTATCTGAAGAAAGTTATGCTAATCATCAAAATGATACTCTCCTNAATTCCAATTTTATAAATGGGTTAGATGAAGAATTAGCACTAATAATAAAGAGACAACGCCCTAGTTGGGCCACTTCTCANACTCACGATTTGGTCAATCTTGCTGACCAGTTGTCTCGTACCTTAACTAAAGAAGAAAGAGAGAGAGAGGCCAAACAAAAGAATAAGGCTAATAAGATTATGAATTTACAACTAAAACAACTATCNACCCAGTCTGGACCTCCAAAATACCCCAATAAACCTCNGAACGGACCTAACCCTCCGCTTTGCAATTATTGCAAAAAACCTGGNCACTTTAAAAAGGATTGCAGAAAACTAAAACGGAGGGAACAACAACAGGCGAAGGAAAAAGGAAAATAGGGATGCTCCGAGGAACTTAAAGGGGCCTTTCCTTTCCTCCTTACTAACACTCTGGGAGAAATAGAAATTATTTTAAATGGAGAACAAACNCAAGCCCTCGTTGACACTGGAGCTACNCTNTCTGTNNTNAACCCCACCTTATTACAAGGCCCCNTTCCTCGGAGTAANNAAANAATTCAAATGGTGGGNGTCNCNAATACTCCTGTAACGGCATATAAATCTCAGCCTNTNNCTTTTCAACTAGGTCCCTTACAAGGNACTCATNTTTTCCTTTTGGTTCCNTCAGCCCCCATNCATCTNNTAGGAAGAGACTTCTTAGAANTNTATAATGCCCACATTTCCTTCTCCCAAAAGGGGAAAATGTATTTAGAATTAGATGANAAAACTGAATTACTAGACATAANAAATTTTTCAAAATCTGATCCTCAATTTACAATTGCAATCCATATTGCCATAGAAGACACTGAATTATTGAGTAATGAAGAATTACAAAANCTGCTAAAGGCAGTACCTGATCANTTATGGTCNAAGTCTTCCACTGATATNGGAAGAATTATNTCGGCTACCCCNATNAAAATTCAAATAGACCCATCNAAACCTCTNCCNAATNTTAAACAATATCCCCTAAAACCNGAAGCNNTAGAAGGAATNAAACCNATAATTNAAGATTATATAAAAAAAGGACTNATNATTCCCTGCACCAGCCCTTGTAATACTCCNATCCTNCCNGTAAAAAAACCNAATGGNNGAGGATGGAGATTTGTNCAAGACCTAAGAGCCATTAACAANATNGTNATTCCTCGNCATCCNGTAGTNCCAAACCCNCATACNTTNTTGNCTNCCATCCCNNCTGAAGGCGANTTCTTCACTGTNATNGATCTATGTAGTGCNTTCTTTAGCATTCCTGTNGATNAAGACAGTCAATATCTNTTTGCCTTCACTTGGGAAGACCGACAATACACCTGGACAGTCATGCCTCAGGGNTATACTGAAAGCCCNNCTTACTTTTCNCAAATATTAAAAGCAGACCTNNCAGACGTTGACTTCCCTAAGAAATCTACTCTNATNCAATATGTAGATGATTTNCTNCTNTGCTCAGAGGATAAGCAAGCCTCTATAGAAGACGGNATTCACTTGTTACAACAATTAGCNNNAAAGGGACACAAGGTTTCNAAAGAAAAACTNCAATTTTGTCAAAAACAAGTNAAATATTTGGGACATTTAATNTCNAAGGAAGGACTTCTTATNAATCCAGANAGACTAAAAGGAATNTTAGCTTTCCCCACCCCGANAACCAAGAGACAACTNAGAGGGTTTCTGGGACTNGCAGGATACTGTNGAAACTGGATNCCNAATTTTTCTTTAATGGCTCAGCCCTTATATGCTCTCTTAAAACAAGACANGCCAGACCCTCTAGANTGGACAGAAGAAAATCAACTAACATTAGAAATGATNAAAAATGACCTTACNAATGCCCCAGCTTTGGGNCATCCNAATTATAANCTTCCATTTTCNTTNTTTGTNCATGAAAGNAANGGAAACGCTTTAGGGGTCCTNACCCAAAAACATGGAGGCCAANATAGACCCGTNGGATATTATAGCCAGCAATTAGACCCNGTNGCTAAAGGACTNCCACCTTGCNTGAGAGCNATANCAGCCGCTGCCNTGTTAGTNAAGGCAACCGAAGAAATNGTNATGGGANCTCCCCTNACTGTTTNCGTNCCTCATTCTGTGGAAGCNCTNCTAAACTCNCACCACACTCAACATTTTTCNGTTAGCAGACTAGCTTCTTATGAAGTTTTNCTTCTTTCNGCTCCTCATATCACCATCTCTAGNTGTAACAATCTNAACCCTGCNACTCTTCTGCCTCCACCTTCAGATGAGACGCCGCACGACTGCGTAACCCTAACTGATCAACTTCTNNCTCCTAGGACAGATCTACAAGAGACTCCCCTNANNAACGCTGATGTTGTTTGGTTTACAGATGGATCNTATTTAAAGGATGAATCTGGAANNTACCGNGCAGGNTACGCTATAGTGTCTTTAACTGAAGNAATAGAAAGCGCTTACCTTCCAGAAGCCACNTCGGCCCAACAAGCAGAATTNATNGCNTTNACCAGAGCTTGTCANTTGGCNAAAGGAANAACTGCTAATATTTATACAGACAGCAGATATGCTTTTGGAGTAGCCCATGATTTTGGAATGCTATGGAAACAAAGAGGNTTTCTNACCTCTTCTGGNCAACCCATNAAAAATGGACACCNTATTTCACAATTNCTAGAAGCCATNTTATTACCAAAATCGCTGGCCATTATTAAAATTCCAGGNCATTCCAAATCAGATACTCCAGAAAGCAGAGGAAATCANCTAGCTGATAAGGTAGCAAAAAGNGCTGCTCTAAACGCATCTAAACAAGAAAANCAACCTATATTAACTTTTAAAGAAGCACCTGAATTTGACATAAAATTAGCTCAATCCAGAGCTCCAAAATCAGAACAGAAAAGTTGGAAAACAAAAGGGGGAANATATTCCCCCAAAGATGAGGTATGGTATGGGCCAAACGACTCGCCTATNCTTCCTGCTGAATTNCAGTTATCATTTTTAACCTATGTACATGATCTAACTCACTGGAGCCCTGACAAAATGATTGCTTGGGGAAAACAATATTGTTGGAAACCTTCTCCGACTATAGCTCATAAGGTNTACAATCGNTGTCNNATTTGTCCAAAATATAATCCAGGAAAACCNTTACACGGTTCCCAAGGACATTTTCCTTTACCCGANGGNCCNTTTGAAGTACGGCAANTGGATTTTATCCAGCTGCCACCNTCACAAGGNTACAAATATGTTCTGGTNATGATTTGCATGTTTTCTCATTGGGTAGAAGCNTTTCCATGCAGAAGAGCNACGGCCTTAGCAGTAAGTAAAATTCTNTTAGAAAANATTATTCCNNCNTGGGGAATTCCTCTGGAACTTCATAGCGACAGAGGNACTCATTTTACTGGACAGATNATTCAATCAGTATGTAAAATCTGGCCNATTCTCCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGATTGGTNGAACGNACAAACGGAATAATNAAAACTCAATTGGCAAAATTAACCGAGGCTTTTAAANTTCCTTGGCCAAAAGCTCTTCCATTGGTTTTGCTTAACCTAAGATCNACCCCTTTCGGNAAACACCAGTTATCNCCNTTTGAAATAATNACAGGCAGACCTATGAAATTGTCTCCAGGAAACTGTGCCTCCTTAATANTAAAAGGAGACATACTCNACTATTGTAANGGCCTTATNAAACAATTAACTAAAAATTATAANTTGGTAAAAGAATCTTTTCACAGTGAGCTCCCGGGAGACGAAGACCTCAAGNACCACGGNCTTCAGCCNGGNGATTTCGTCTACTGGAAANGACATCTNTTAAAGGACTCTCTCCAACCNCGNTGGAANGGNCCTTATCAGGTGCTNTTNACTAATCCTTGTGCTGCTAAGTTANAGGGCNTTGACTCCTGGATNCACGTNTCTCATCTAAAGAAGGCTGAGCCTCCTGAATGGACTGTTTCACCGGAAGGTGATCTCCGACTTAAGATAAGTCGACGCCAGGCCGAGAAGAAGATGACATCTGANGTAGACNGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAATGAATGCTTAATACTAACAATCGTTAATAGATGGGGAAGATTTTCCTTTACAAGCTCCCACTAAACTTCTTTCTTTTTATCCTTAGTTCTCATGTCTTGGTACTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTTTTGCAATGGGCCCAGGACTATGCTAATAGATTACAAAAAGACGCTTGCTGGGTATGTGGCCTCATGCCCCTTTCCAGTGGTTCTGGCCTACCATGGTGGGTATCTCCTCTCCAAGGACAAGACTGGATAGAATATCAGAAATATATCCGTNTTTCTCAAGAACAGTCATCGGTACTTAACACTAGTATGACTAAGGATAATGTACATCACTGGCCTATTAGTAATACTTTACAAAATAAGGGGCATAGGAAGAGCTTCTCGGTAAAAGAAACTAGTTCACTAGCTTTAACNCTGGCGCTGCCCCAGCTGAGAGACGAGACAATAACGCTGCCCCAATCGAAAGATAAGACAACTCAATTTCAGGATGGTATAACACAAATTTGGGACGGNTTTATCTGGCTTACCCCCTCCTTTGGCCAGCTTAGTCAGCNTGTCCCTTTATGTTGGGAACAGAAAAATCACACCAAAGATANCTGGCCCAACTGCACTAGAGATATGGGATGGATACCCAAAGAACGGTGTATCCGCACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATAGGCACAATAACCGAGTATTTATTGGTTAGCTCCAAATAGAACGTCTTGGCTATGTGGCACTAATCTATGGCCATGGTTACCCCCAGGATGGTTAGGACGATGTTCTTTGGGTTATGCTTGGGCACAAGGTCGAATAGTTCATACCCTGTCAAAACCCGCAAATTTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTGTTCCATTGGTATGATCATTTAGCTTCCATCTTTNTACCACAACTGGGTATTGAAGATGTCATTTGGCATGTAGAGGCCCTAACCAATTATACACAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAATAATGAAGTTACTCTCATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCTATCATAAAAACTGAATGCTGTGTCTATATCCCAGATGAATCAAATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACCAACCTTTCAGATCCAAAACCCTCTCTAAGCGACTGGCTAAGTAGCTGGTTTGGATCTTGGGGAACTTGGTGACAAAAACTGTTACTTATTCTAGGAATTATAATCATTTGTTGTGTTTTGTCCTGTTTTTGTCTACACTGCTGTTACGGCATTTGTTTGCAATNGAGTCAACGTACAACTGAAAAGGCTAGAGTGATGNTTGCCCAAAGAATTGCTTTAATTGAAGANGCAGTCGTGTAGCCTGAATCAGGTTCCAGGATTACTTCCCTTNTGTTGCTTTGTAATTCGGCCTTGGTCCNTCCGTTTTNTGACTTGTCCAATCCCCCCTCCCATGGGACATGACTTCCTAGGAATGAGCCTTCCTAGTGACGTGGGATTAGACTCNTGAACATAAAAGGAGTCAAAACTANTGAGTTCNTCTACGATGCTTTCTCCGAAAGATCTTGAAGAAAAGGGGGAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24B_Prim | DOT6 | 626 | 635 | + | 16.33 | AGCTCATCGC |
| ERV24B_Prim | ZSCAN29 | 7282 | 7292 | + | 16.33 | TGTCTACACTG |
| ERV24B_Prim | WRKY55 | 3272 | 3280 | + | 16.27 | CGTTGACTT |
| ERV24B_Prim | ZNF157 | 3182 | 3202 | + | 16.24 | AGACCGACAATACACCTGGAC |
| ERV24B_Prim | eor-1 | 2013 | 2025 | + | 16.24 | AGAGAGAGAGAGG |
| ERV24B_Prim | Tcf21 | 6042 | 6051 | - | 16.22 | AACAGCTGGT |
| ERV24B_Prim | HAT5 | 2144 | 2152 | - | 16.17 | CAATAATTG |
| ERV24B_Prim | SPIC | 406 | 418 | + | 16.15 | AAAAGAGGAAGTG |
| ERV24B_Prim | WRKY46 | 3272 | 3281 | + | 16.10 | CGTTGACTTC |
| ERV24B_Prim | MAZ | 7476 | 7483 | + | 16.08 | CCCCTCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
