ERV24B_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000114 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7613 |
| Kimura value | 24.25 |
| Tau index | 0.5256 |
| Description | ERV1 retrotransposon, ERV24B_Prim subfamily |
| Comment | Autonomous ERV with LTR24B LTRs. ORFs: (roughly) gag 894-2234, pol 2235-5930, env 5962-6642. |
| Sequence |
TTTTGGCGACCCAGATGGGACCCGAAGCGAGCCTTCCGTCGATCCCCGCCGCTTCGCCGACAGCCGGGGCCCTGGTACCAGCACGAACGGCTTTCGTTCACCCGACCTCGCCGGAGCCGGCGGGGGTCTCTGGCGAGGCTCCTCTCGGGTTTCGAATCTCCCTGGTTTTGGCTGAGATTCAGACTTTATTCAAGCGACCCGATTCCACGCTCGACGGAGCTGGAATTGAAGCTCTACTGCTTTAAGGTAGGAGTTTCGTTTGTTATTTCTCTAGAGATTCTGCTGTTTGCAGGTTTGTGGTTTCACTTTTCTTTGAGGTTAAGGTTTTGTTTGTCTTACTTGCTAAAGTTTTGCAACCTTTTCTCTCGTTCGAAATTTGGTCAAGGAGAAAACAGTTTCTCTTTGAAAAGAGGAAGTGAATNTCTGTGGCTTAAGCAAAATTTGTGATCTTTAAAACTGGCCAGGTTCTGAAGCTCGGTTCAATTGACATATCTAAANTCTCTTCTTGAGTGACCAAAATTANAAAAAGCTTTCTATGAGGACGTGATAAGTCCCGAAGATAAGGGACACTGTTCCTCCCGGCCGAAAGGCACCTTAGGCGACTAAGGTCTCGCGGGAGTGTCGGAGCTCATCGCTCGTGACGTGCAACGGTCCCATAGGGAATCCCCAAAGAAGAACATACAGGGAANTTTGCTTAACCCGGTGGGCACACATAAGGGGCTGATCTCCCAGTGCCTTAAGCGCCCAGGATTCCTGGGTTTCACCGAGACACGTAAGAGGGGAGAAGCGACTCANGGGTGACACCTCGAGGAGTNATNCCCATTAAGCAGCACACTTGACCCAAAACATCTTTCCCTTTCAGTCTTTGGTCACTTAAGAAGAGAACCCAAATTATGGGCAATCGNCCATCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCTTTAGAAACNCCAGCTGGNTTTATGTACAACACTTATGGNGCCNCCTCTTGTAAATATCTAGGAAAATGGNCTCACNTAACCCGNGAAGANCCNAAATTACAATGGCCAAAATGGGGTACCTTTGAAATGCCTAAANTAATTTATTTGCGTGCNCAATTAGAAAAAGCCGGCTCTAGAATNAAACAAAATAANTGGGAGANTTACTTCCAATGGTACTTAGAAGCNTCCAAAAGAGGTTCTGANAAAGTTGCTTCCTTNCAGGAAGNAAACAAAAAGNTGTCTAAAACNATTTCTGAATTTAAAAAGACTGCTGAAGCTTCTCCTCCTCCTCCCTCAGCTCCTCCTTCTCTTTACCCTTTATTGTCTGAACTACCTTGCCCNGACCTACCTTCTCTTCCTCCTCCTCCTCCTGCTCCTGCTGTTCTGGCTCCATTTCNCGAACAGCCAGTGTCTGGTAGGGGAGAACCTGCCTTAGTTTATCAACCATGGTCAAAGGTAGAACTTAAAGGCATAATTAAGGAATTTCCTGATCCTCACCAGGACCCTATTGGTTTTGCCAGGGAATTTGAATTAAATATTCGAGCTTATGACCCTGGCTTTTCTGATTTNTATCAACTAGTTCACATGTTAGTNTCAGAAAGCAAGGCTAAAGATTGGNTAGATAAGGCNNACTGGAGAAATCCCTTAGAGGATTTTCATAAATGTTCAGAAGAAGACCGCAGACGTGCCCGTGAAACTGCAAAGGCTCTGCNTGAAGCCATTCCTTNAGTCTTCCAAAAGGTAGTNGACTGGAANAAAATACAACAATGTCGACAAAATCCAGATGAGTCNGTGATGNCATATTTTGAAAGATTTGAAAAAACNTTTAAACAATATTCAGGNTTATCTGAAGAAAGTTATGCTAATCATCAAAATGATACTCTCCTNAATTCCAATTTTATAAATGGGTTAGATGAAGAATTAGCACTAATAATAAAGAGACAACGCCCTAGTTGGGCCACTTCTCANACTCACGATTTGGTCAATCTTGCTGACCAGTTGTCTCGTACCTTAACTAAAGAAGAAAGAGAGAGAGAGGCCAAACAAAAGAATAAGGCTAATAAGATTATGAATTTACAACTAAAACAACTATCNACCCAGTCTGGACCTCCAAAATACCCCAATAAACCTCNGAACGGACCTAACCCTCCGCTTTGCAATTATTGCAAAAAACCTGGNCACTTTAAAAAGGATTGCAGAAAACTAAAACGGAGGGAACAACAACAGGCGAAGGAAAAAGGAAAATAGGGATGCTCCGAGGAACTTAAAGGGGCCTTTCCTTTCCTCCTTACTAACACTCTGGGAGAAATAGAAATTATTTTAAATGGAGAACAAACNCAAGCCCTCGTTGACACTGGAGCTACNCTNTCTGTNNTNAACCCCACCTTATTACAAGGCCCCNTTCCTCGGAGTAANNAAANAATTCAAATGGTGGGNGTCNCNAATACTCCTGTAACGGCATATAAATCTCAGCCTNTNNCTTTTCAACTAGGTCCCTTACAAGGNACTCATNTTTTCCTTTTGGTTCCNTCAGCCCCCATNCATCTNNTAGGAAGAGACTTCTTAGAANTNTATAATGCCCACATTTCCTTCTCCCAAAAGGGGAAAATGTATTTAGAATTAGATGANAAAACTGAATTACTAGACATAANAAATTTTTCAAAATCTGATCCTCAATTTACAATTGCAATCCATATTGCCATAGAAGACACTGAATTATTGAGTAATGAAGAATTACAAAANCTGCTAAAGGCAGTACCTGATCANTTATGGTCNAAGTCTTCCACTGATATNGGAAGAATTATNTCGGCTACCCCNATNAAAATTCAAATAGACCCATCNAAACCTCTNCCNAATNTTAAACAATATCCCCTAAAACCNGAAGCNNTAGAAGGAATNAAACCNATAATTNAAGATTATATAAAAAAAGGACTNATNATTCCCTGCACCAGCCCTTGTAATACTCCNATCCTNCCNGTAAAAAAACCNAATGGNNGAGGATGGAGATTTGTNCAAGACCTAAGAGCCATTAACAANATNGTNATTCCTCGNCATCCNGTAGTNCCAAACCCNCATACNTTNTTGNCTNCCATCCCNNCTGAAGGCGANTTCTTCACTGTNATNGATCTATGTAGTGCNTTCTTTAGCATTCCTGTNGATNAAGACAGTCAATATCTNTTTGCCTTCACTTGGGAAGACCGACAATACACCTGGACAGTCATGCCTCAGGGNTATACTGAAAGCCCNNCTTACTTTTCNCAAATATTAAAAGCAGACCTNNCAGACGTTGACTTCCCTAAGAAATCTACTCTNATNCAATATGTAGATGATTTNCTNCTNTGCTCAGAGGATAAGCAAGCCTCTATAGAAGACGGNATTCACTTGTTACAACAATTAGCNNNAAAGGGACACAAGGTTTCNAAAGAAAAACTNCAATTTTGTCAAAAACAAGTNAAATATTTGGGACATTTAATNTCNAAGGAAGGACTTCTTATNAATCCAGANAGACTAAAAGGAATNTTAGCTTTCCCCACCCCGANAACCAAGAGACAACTNAGAGGGTTTCTGGGACTNGCAGGATACTGTNGAAACTGGATNCCNAATTTTTCTTTAATGGCTCAGCCCTTATATGCTCTCTTAAAACAAGACANGCCAGACCCTCTAGANTGGACAGAAGAAAATCAACTAACATTAGAAATGATNAAAAATGACCTTACNAATGCCCCAGCTTTGGGNCATCCNAATTATAANCTTCCATTTTCNTTNTTTGTNCATGAAAGNAANGGAAACGCTTTAGGGGTCCTNACCCAAAAACATGGAGGCCAANATAGACCCGTNGGATATTATAGCCAGCAATTAGACCCNGTNGCTAAAGGACTNCCACCTTGCNTGAGAGCNATANCAGCCGCTGCCNTGTTAGTNAAGGCAACCGAAGAAATNGTNATGGGANCTCCCCTNACTGTTTNCGTNCCTCATTCTGTGGAAGCNCTNCTAAACTCNCACCACACTCAACATTTTTCNGTTAGCAGACTAGCTTCTTATGAAGTTTTNCTTCTTTCNGCTCCTCATATCACCATCTCTAGNTGTAACAATCTNAACCCTGCNACTCTTCTGCCTCCACCTTCAGATGAGACGCCGCACGACTGCGTAACCCTAACTGATCAACTTCTNNCTCCTAGGACAGATCTACAAGAGACTCCCCTNANNAACGCTGATGTTGTTTGGTTTACAGATGGATCNTATTTAAAGGATGAATCTGGAANNTACCGNGCAGGNTACGCTATAGTGTCTTTAACTGAAGNAATAGAAAGCGCTTACCTTCCAGAAGCCACNTCGGCCCAACAAGCAGAATTNATNGCNTTNACCAGAGCTTGTCANTTGGCNAAAGGAANAACTGCTAATATTTATACAGACAGCAGATATGCTTTTGGAGTAGCCCATGATTTTGGAATGCTATGGAAACAAAGAGGNTTTCTNACCTCTTCTGGNCAACCCATNAAAAATGGACACCNTATTTCACAATTNCTAGAAGCCATNTTATTACCAAAATCGCTGGCCATTATTAAAATTCCAGGNCATTCCAAATCAGATACTCCAGAAAGCAGAGGAAATCANCTAGCTGATAAGGTAGCAAAAAGNGCTGCTCTAAACGCATCTAAACAAGAAAANCAACCTATATTAACTTTTAAAGAAGCACCTGAATTTGACATAAAATTAGCTCAATCCAGAGCTCCAAAATCAGAACAGAAAAGTTGGAAAACAAAAGGGGGAANATATTCCCCCAAAGATGAGGTATGGTATGGGCCAAACGACTCGCCTATNCTTCCTGCTGAATTNCAGTTATCATTTTTAACCTATGTACATGATCTAACTCACTGGAGCCCTGACAAAATGATTGCTTGGGGAAAACAATATTGTTGGAAACCTTCTCCGACTATAGCTCATAAGGTNTACAATCGNTGTCNNATTTGTCCAAAATATAATCCAGGAAAACCNTTACACGGTTCCCAAGGACATTTTCCTTTACCCGANGGNCCNTTTGAAGTACGGCAANTGGATTTTATCCAGCTGCCACCNTCACAAGGNTACAAATATGTTCTGGTNATGATTTGCATGTTTTCTCATTGGGTAGAAGCNTTTCCATGCAGAAGAGCNACGGCCTTAGCAGTAAGTAAAATTCTNTTAGAAAANATTATTCCNNCNTGGGGAATTCCTCTGGAACTTCATAGCGACAGAGGNACTCATTTTACTGGACAGATNATTCAATCAGTATGTAAAATCTGGCCNATTCTCCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGATTGGTNGAACGNACAAACGGAATAATNAAAACTCAATTGGCAAAATTAACCGAGGCTTTTAAANTTCCTTGGCCAAAAGCTCTTCCATTGGTTTTGCTTAACCTAAGATCNACCCCTTTCGGNAAACACCAGTTATCNCCNTTTGAAATAATNACAGGCAGACCTATGAAATTGTCTCCAGGAAACTGTGCCTCCTTAATANTAAAAGGAGACATACTCNACTATTGTAANGGCCTTATNAAACAATTAACTAAAAATTATAANTTGGTAAAAGAATCTTTTCACAGTGAGCTCCCGGGAGACGAAGACCTCAAGNACCACGGNCTTCAGCCNGGNGATTTCGTCTACTGGAAANGACATCTNTTAAAGGACTCTCTCCAACCNCGNTGGAANGGNCCTTATCAGGTGCTNTTNACTAATCCTTGTGCTGCTAAGTTANAGGGCNTTGACTCCTGGATNCACGTNTCTCATCTAAAGAAGGCTGAGCCTCCTGAATGGACTGTTTCACCGGAAGGTGATCTCCGACTTAAGATAAGTCGACGCCAGGCCGAGAAGAAGATGACATCTGANGTAGACNGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAATGAATGCTTAATACTAACAATCGTTAATAGATGGGGAAGATTTTCCTTTACAAGCTCCCACTAAACTTCTTTCTTTTTATCCTTAGTTCTCATGTCTTGGTACTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTTTTGCAATGGGCCCAGGACTATGCTAATAGATTACAAAAAGACGCTTGCTGGGTATGTGGCCTCATGCCCCTTTCCAGTGGTTCTGGCCTACCATGGTGGGTATCTCCTCTCCAAGGACAAGACTGGATAGAATATCAGAAATATATCCGTNTTTCTCAAGAACAGTCATCGGTACTTAACACTAGTATGACTAAGGATAATGTACATCACTGGCCTATTAGTAATACTTTACAAAATAAGGGGCATAGGAAGAGCTTCTCGGTAAAAGAAACTAGTTCACTAGCTTTAACNCTGGCGCTGCCCCAGCTGAGAGACGAGACAATAACGCTGCCCCAATCGAAAGATAAGACAACTCAATTTCAGGATGGTATAACACAAATTTGGGACGGNTTTATCTGGCTTACCCCCTCCTTTGGCCAGCTTAGTCAGCNTGTCCCTTTATGTTGGGAACAGAAAAATCACACCAAAGATANCTGGCCCAACTGCACTAGAGATATGGGATGGATACCCAAAGAACGGTGTATCCGCACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATAGGCACAATAACCGAGTATTTATTGGTTAGCTCCAAATAGAACGTCTTGGCTATGTGGCACTAATCTATGGCCATGGTTACCCCCAGGATGGTTAGGACGATGTTCTTTGGGTTATGCTTGGGCACAAGGTCGAATAGTTCATACCCTGTCAAAACCCGCAAATTTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTGTTCCATTGGTATGATCATTTAGCTTCCATCTTTNTACCACAACTGGGTATTGAAGATGTCATTTGGCATGTAGAGGCCCTAACCAATTATACACAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAATAATGAAGTTACTCTCATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCTATCATAAAAACTGAATGCTGTGTCTATATCCCAGATGAATCAAATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACCAACCTTTCAGATCCAAAACCCTCTCTAAGCGACTGGCTAAGTAGCTGGTTTGGATCTTGGGGAACTTGGTGACAAAAACTGTTACTTATTCTAGGAATTATAATCATTTGTTGTGTTTTGTCCTGTTTTTGTCTACACTGCTGTTACGGCATTTGTTTGCAATNGAGTCAACGTACAACTGAAAAGGCTAGAGTGATGNTTGCCCAAAGAATTGCTTTAATTGAAGANGCAGTCGTGTAGCCTGAATCAGGTTCCAGGATTACTTCCCTTNTGTTGCTTTGTAATTCGGCCTTGGTCCNTCCGTTTTNTGACTTGTCCAATCCCCCCTCCCATGGGACATGACTTCCTAGGAATGAGCCTTCCTAGTGACGTGGGATTAGACTCNTGAACATAAAAGGAGTCAAAACTANTGAGTTCNTCTACGATGCTTTCTCCGAAAGATCTTGAAGAAAAGGGGGAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24B_Prim | RAMOSA1 | 2010 | 2023 | + | 22.33 | GAAAGAGAGAGAGA |
| ERV24B_Prim | RAMOSA1 | 2012 | 2025 | + | 20.97 | AAGAGAGAGAGAGG |
| ERV24B_Prim | SPIB | 407 | 419 | - | 20.94 | TCACTTCCTCTTT |
| ERV24B_Prim | Spi1 | 407 | 419 | + | 20.24 | AAAGAGGAAGTGA |
| ERV24B_Prim | ANT | 4985 | 5000 | + | 18.57 | ACACGGTTCCCAAGGA |
| ERV24B_Prim | PI | 2582 | 2595 | + | 18.53 | CCAAAAGGGGAAAA |
| ERV24B_Prim | PLT1 | 4984 | 4999 | + | 18.36 | TACACGGTTCCCAAGG |
| ERV24B_Prim | AS2 | 109 | 126 | + | 17.59 | CGCCGGAGCCGGCGGGGG |
| ERV24B_Prim | ZNF701 | 1274 | 1290 | - | 17.48 | GAGGAGCTGAGGGAGGA |
| ERV24B_Prim | AP3 | 2582 | 2594 | + | 17.30 | CCAAAAGGGGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
