ERV24B_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000114 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7613 |
| Kimura value | 24.25 |
| Tau index | 0.5256 |
| Description | ERV1 retrotransposon, ERV24B_Prim subfamily |
| Comment | Autonomous ERV with LTR24B LTRs. ORFs: (roughly) gag 894-2234, pol 2235-5930, env 5962-6642. |
| Sequence |
TTTTGGCGACCCAGATGGGACCCGAAGCGAGCCTTCCGTCGATCCCCGCCGCTTCGCCGACAGCCGGGGCCCTGGTACCAGCACGAACGGCTTTCGTTCACCCGACCTCGCCGGAGCCGGCGGGGGTCTCTGGCGAGGCTCCTCTCGGGTTTCGAATCTCCCTGGTTTTGGCTGAGATTCAGACTTTATTCAAGCGACCCGATTCCACGCTCGACGGAGCTGGAATTGAAGCTCTACTGCTTTAAGGTAGGAGTTTCGTTTGTTATTTCTCTAGAGATTCTGCTGTTTGCAGGTTTGTGGTTTCACTTTTCTTTGAGGTTAAGGTTTTGTTTGTCTTACTTGCTAAAGTTTTGCAACCTTTTCTCTCGTTCGAAATTTGGTCAAGGAGAAAACAGTTTCTCTTTGAAAAGAGGAAGTGAATNTCTGTGGCTTAAGCAAAATTTGTGATCTTTAAAACTGGCCAGGTTCTGAAGCTCGGTTCAATTGACATATCTAAANTCTCTTCTTGAGTGACCAAAATTANAAAAAGCTTTCTATGAGGACGTGATAAGTCCCGAAGATAAGGGACACTGTTCCTCCCGGCCGAAAGGCACCTTAGGCGACTAAGGTCTCGCGGGAGTGTCGGAGCTCATCGCTCGTGACGTGCAACGGTCCCATAGGGAATCCCCAAAGAAGAACATACAGGGAANTTTGCTTAACCCGGTGGGCACACATAAGGGGCTGATCTCCCAGTGCCTTAAGCGCCCAGGATTCCTGGGTTTCACCGAGACACGTAAGAGGGGAGAAGCGACTCANGGGTGACACCTCGAGGAGTNATNCCCATTAAGCAGCACACTTGACCCAAAACATCTTTCCCTTTCAGTCTTTGGTCACTTAAGAAGAGAACCCAAATTATGGGCAATCGNCCATCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCTTTAGAAACNCCAGCTGGNTTTATGTACAACACTTATGGNGCCNCCTCTTGTAAATATCTAGGAAAATGGNCTCACNTAACCCGNGAAGANCCNAAATTACAATGGCCAAAATGGGGTACCTTTGAAATGCCTAAANTAATTTATTTGCGTGCNCAATTAGAAAAAGCCGGCTCTAGAATNAAACAAAATAANTGGGAGANTTACTTCCAATGGTACTTAGAAGCNTCCAAAAGAGGTTCTGANAAAGTTGCTTCCTTNCAGGAAGNAAACAAAAAGNTGTCTAAAACNATTTCTGAATTTAAAAAGACTGCTGAAGCTTCTCCTCCTCCTCCCTCAGCTCCTCCTTCTCTTTACCCTTTATTGTCTGAACTACCTTGCCCNGACCTACCTTCTCTTCCTCCTCCTCCTCCTGCTCCTGCTGTTCTGGCTCCATTTCNCGAACAGCCAGTGTCTGGTAGGGGAGAACCTGCCTTAGTTTATCAACCATGGTCAAAGGTAGAACTTAAAGGCATAATTAAGGAATTTCCTGATCCTCACCAGGACCCTATTGGTTTTGCCAGGGAATTTGAATTAAATATTCGAGCTTATGACCCTGGCTTTTCTGATTTNTATCAACTAGTTCACATGTTAGTNTCAGAAAGCAAGGCTAAAGATTGGNTAGATAAGGCNNACTGGAGAAATCCCTTAGAGGATTTTCATAAATGTTCAGAAGAAGACCGCAGACGTGCCCGTGAAACTGCAAAGGCTCTGCNTGAAGCCATTCCTTNAGTCTTCCAAAAGGTAGTNGACTGGAANAAAATACAACAATGTCGACAAAATCCAGATGAGTCNGTGATGNCATATTTTGAAAGATTTGAAAAAACNTTTAAACAATATTCAGGNTTATCTGAAGAAAGTTATGCTAATCATCAAAATGATACTCTCCTNAATTCCAATTTTATAAATGGGTTAGATGAAGAATTAGCACTAATAATAAAGAGACAACGCCCTAGTTGGGCCACTTCTCANACTCACGATTTGGTCAATCTTGCTGACCAGTTGTCTCGTACCTTAACTAAAGAAGAAAGAGAGAGAGAGGCCAAACAAAAGAATAAGGCTAATAAGATTATGAATTTACAACTAAAACAACTATCNACCCAGTCTGGACCTCCAAAATACCCCAATAAACCTCNGAACGGACCTAACCCTCCGCTTTGCAATTATTGCAAAAAACCTGGNCACTTTAAAAAGGATTGCAGAAAACTAAAACGGAGGGAACAACAACAGGCGAAGGAAAAAGGAAAATAGGGATGCTCCGAGGAACTTAAAGGGGCCTTTCCTTTCCTCCTTACTAACACTCTGGGAGAAATAGAAATTATTTTAAATGGAGAACAAACNCAAGCCCTCGTTGACACTGGAGCTACNCTNTCTGTNNTNAACCCCACCTTATTACAAGGCCCCNTTCCTCGGAGTAANNAAANAATTCAAATGGTGGGNGTCNCNAATACTCCTGTAACGGCATATAAATCTCAGCCTNTNNCTTTTCAACTAGGTCCCTTACAAGGNACTCATNTTTTCCTTTTGGTTCCNTCAGCCCCCATNCATCTNNTAGGAAGAGACTTCTTAGAANTNTATAATGCCCACATTTCCTTCTCCCAAAAGGGGAAAATGTATTTAGAATTAGATGANAAAACTGAATTACTAGACATAANAAATTTTTCAAAATCTGATCCTCAATTTACAATTGCAATCCATATTGCCATAGAAGACACTGAATTATTGAGTAATGAAGAATTACAAAANCTGCTAAAGGCAGTACCTGATCANTTATGGTCNAAGTCTTCCACTGATATNGGAAGAATTATNTCGGCTACCCCNATNAAAATTCAAATAGACCCATCNAAACCTCTNCCNAATNTTAAACAATATCCCCTAAAACCNGAAGCNNTAGAAGGAATNAAACCNATAATTNAAGATTATATAAAAAAAGGACTNATNATTCCCTGCACCAGCCCTTGTAATACTCCNATCCTNCCNGTAAAAAAACCNAATGGNNGAGGATGGAGATTTGTNCAAGACCTAAGAGCCATTAACAANATNGTNATTCCTCGNCATCCNGTAGTNCCAAACCCNCATACNTTNTTGNCTNCCATCCCNNCTGAAGGCGANTTCTTCACTGTNATNGATCTATGTAGTGCNTTCTTTAGCATTCCTGTNGATNAAGACAGTCAATATCTNTTTGCCTTCACTTGGGAAGACCGACAATACACCTGGACAGTCATGCCTCAGGGNTATACTGAAAGCCCNNCTTACTTTTCNCAAATATTAAAAGCAGACCTNNCAGACGTTGACTTCCCTAAGAAATCTACTCTNATNCAATATGTAGATGATTTNCTNCTNTGCTCAGAGGATAAGCAAGCCTCTATAGAAGACGGNATTCACTTGTTACAACAATTAGCNNNAAAGGGACACAAGGTTTCNAAAGAAAAACTNCAATTTTGTCAAAAACAAGTNAAATATTTGGGACATTTAATNTCNAAGGAAGGACTTCTTATNAATCCAGANAGACTAAAAGGAATNTTAGCTTTCCCCACCCCGANAACCAAGAGACAACTNAGAGGGTTTCTGGGACTNGCAGGATACTGTNGAAACTGGATNCCNAATTTTTCTTTAATGGCTCAGCCCTTATATGCTCTCTTAAAACAAGACANGCCAGACCCTCTAGANTGGACAGAAGAAAATCAACTAACATTAGAAATGATNAAAAATGACCTTACNAATGCCCCAGCTTTGGGNCATCCNAATTATAANCTTCCATTTTCNTTNTTTGTNCATGAAAGNAANGGAAACGCTTTAGGGGTCCTNACCCAAAAACATGGAGGCCAANATAGACCCGTNGGATATTATAGCCAGCAATTAGACCCNGTNGCTAAAGGACTNCCACCTTGCNTGAGAGCNATANCAGCCGCTGCCNTGTTAGTNAAGGCAACCGAAGAAATNGTNATGGGANCTCCCCTNACTGTTTNCGTNCCTCATTCTGTGGAAGCNCTNCTAAACTCNCACCACACTCAACATTTTTCNGTTAGCAGACTAGCTTCTTATGAAGTTTTNCTTCTTTCNGCTCCTCATATCACCATCTCTAGNTGTAACAATCTNAACCCTGCNACTCTTCTGCCTCCACCTTCAGATGAGACGCCGCACGACTGCGTAACCCTAACTGATCAACTTCTNNCTCCTAGGACAGATCTACAAGAGACTCCCCTNANNAACGCTGATGTTGTTTGGTTTACAGATGGATCNTATTTAAAGGATGAATCTGGAANNTACCGNGCAGGNTACGCTATAGTGTCTTTAACTGAAGNAATAGAAAGCGCTTACCTTCCAGAAGCCACNTCGGCCCAACAAGCAGAATTNATNGCNTTNACCAGAGCTTGTCANTTGGCNAAAGGAANAACTGCTAATATTTATACAGACAGCAGATATGCTTTTGGAGTAGCCCATGATTTTGGAATGCTATGGAAACAAAGAGGNTTTCTNACCTCTTCTGGNCAACCCATNAAAAATGGACACCNTATTTCACAATTNCTAGAAGCCATNTTATTACCAAAATCGCTGGCCATTATTAAAATTCCAGGNCATTCCAAATCAGATACTCCAGAAAGCAGAGGAAATCANCTAGCTGATAAGGTAGCAAAAAGNGCTGCTCTAAACGCATCTAAACAAGAAAANCAACCTATATTAACTTTTAAAGAAGCACCTGAATTTGACATAAAATTAGCTCAATCCAGAGCTCCAAAATCAGAACAGAAAAGTTGGAAAACAAAAGGGGGAANATATTCCCCCAAAGATGAGGTATGGTATGGGCCAAACGACTCGCCTATNCTTCCTGCTGAATTNCAGTTATCATTTTTAACCTATGTACATGATCTAACTCACTGGAGCCCTGACAAAATGATTGCTTGGGGAAAACAATATTGTTGGAAACCTTCTCCGACTATAGCTCATAAGGTNTACAATCGNTGTCNNATTTGTCCAAAATATAATCCAGGAAAACCNTTACACGGTTCCCAAGGACATTTTCCTTTACCCGANGGNCCNTTTGAAGTACGGCAANTGGATTTTATCCAGCTGCCACCNTCACAAGGNTACAAATATGTTCTGGTNATGATTTGCATGTTTTCTCATTGGGTAGAAGCNTTTCCATGCAGAAGAGCNACGGCCTTAGCAGTAAGTAAAATTCTNTTAGAAAANATTATTCCNNCNTGGGGAATTCCTCTGGAACTTCATAGCGACAGAGGNACTCATTTTACTGGACAGATNATTCAATCAGTATGTAAAATCTGGCCNATTCTCCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGATTGGTNGAACGNACAAACGGAATAATNAAAACTCAATTGGCAAAATTAACCGAGGCTTTTAAANTTCCTTGGCCAAAAGCTCTTCCATTGGTTTTGCTTAACCTAAGATCNACCCCTTTCGGNAAACACCAGTTATCNCCNTTTGAAATAATNACAGGCAGACCTATGAAATTGTCTCCAGGAAACTGTGCCTCCTTAATANTAAAAGGAGACATACTCNACTATTGTAANGGCCTTATNAAACAATTAACTAAAAATTATAANTTGGTAAAAGAATCTTTTCACAGTGAGCTCCCGGGAGACGAAGACCTCAAGNACCACGGNCTTCAGCCNGGNGATTTCGTCTACTGGAAANGACATCTNTTAAAGGACTCTCTCCAACCNCGNTGGAANGGNCCTTATCAGGTGCTNTTNACTAATCCTTGTGCTGCTAAGTTANAGGGCNTTGACTCCTGGATNCACGTNTCTCATCTAAAGAAGGCTGAGCCTCCTGAATGGACTGTTTCACCGGAAGGTGATCTCCGACTTAAGATAAGTCGACGCCAGGCCGAGAAGAAGATGACATCTGANGTAGACNGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAATGAATGCTTAATACTAACAATCGTTAATAGATGGGGAAGATTTTCCTTTACAAGCTCCCACTAAACTTCTTTCTTTTTATCCTTAGTTCTCATGTCTTGGTACTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTTTTGCAATGGGCCCAGGACTATGCTAATAGATTACAAAAAGACGCTTGCTGGGTATGTGGCCTCATGCCCCTTTCCAGTGGTTCTGGCCTACCATGGTGGGTATCTCCTCTCCAAGGACAAGACTGGATAGAATATCAGAAATATATCCGTNTTTCTCAAGAACAGTCATCGGTACTTAACACTAGTATGACTAAGGATAATGTACATCACTGGCCTATTAGTAATACTTTACAAAATAAGGGGCATAGGAAGAGCTTCTCGGTAAAAGAAACTAGTTCACTAGCTTTAACNCTGGCGCTGCCCCAGCTGAGAGACGAGACAATAACGCTGCCCCAATCGAAAGATAAGACAACTCAATTTCAGGATGGTATAACACAAATTTGGGACGGNTTTATCTGGCTTACCCCCTCCTTTGGCCAGCTTAGTCAGCNTGTCCCTTTATGTTGGGAACAGAAAAATCACACCAAAGATANCTGGCCCAACTGCACTAGAGATATGGGATGGATACCCAAAGAACGGTGTATCCGCACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATAGGCACAATAACCGAGTATTTATTGGTTAGCTCCAAATAGAACGTCTTGGCTATGTGGCACTAATCTATGGCCATGGTTACCCCCAGGATGGTTAGGACGATGTTCTTTGGGTTATGCTTGGGCACAAGGTCGAATAGTTCATACCCTGTCAAAACCCGCAAATTTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTGTTCCATTGGTATGATCATTTAGCTTCCATCTTTNTACCACAACTGGGTATTGAAGATGTCATTTGGCATGTAGAGGCCCTAACCAATTATACACAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAATAATGAAGTTACTCTCATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCTATCATAAAAACTGAATGCTGTGTCTATATCCCAGATGAATCAAATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACCAACCTTTCAGATCCAAAACCCTCTCTAAGCGACTGGCTAAGTAGCTGGTTTGGATCTTGGGGAACTTGGTGACAAAAACTGTTACTTATTCTAGGAATTATAATCATTTGTTGTGTTTTGTCCTGTTTTTGTCTACACTGCTGTTACGGCATTTGTTTGCAATNGAGTCAACGTACAACTGAAAAGGCTAGAGTGATGNTTGCCCAAAGAATTGCTTTAATTGAAGANGCAGTCGTGTAGCCTGAATCAGGTTCCAGGATTACTTCCCTTNTGTTGCTTTGTAATTCGGCCTTGGTCCNTCCGTTTTNTGACTTGTCCAATCCCCCCTCCCATGGGACATGACTTCCTAGGAATGAGCCTTCCTAGTGACGTGGGATTAGACTCNTGAACATAAAAGGAGTCAAAACTANTGAGTTCNTCTACGATGCTTTCTCCGAAAGATCTTGAAGAAAAGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24B_Prim | BPC5 | 5984 | 6013 | - | -38.65 | GGATAAAAAGAAAGAAGTTTAGTGGGAGCT |
| ERV24B_Prim | BPC5 | 1995 | 2024 | + | -39.22 | ACCTTAACTAAAGAAGAAAGAGAGAGAGAG |
| ERV24B_Prim | DAL81 | 6108 | 6126 | + | -39.42 | AAAAGACGCTTGCTGGGTA |
| ERV24B_Prim | BPC5 | 1270 | 1299 | - | -40.59 | AAAGAGAAGGAGGAGCTGAGGGAGGAGGAG |
| ERV24B_Prim | BPC5 | 1276 | 1305 | - | -42.82 | AAGGGTAAAGAGAAGGAGGAGCTGAGGGAG |
| ERV24B_Prim | BPC5 | 2005 | 2034 | + | -43.09 | AAGAAGAAAGAGAGAGAGAGGCCAAACAAA |
| ERV24B_Prim | BPC5 | 2013 | 2042 | + | -43.99 | AGAGAGAGAGAGGCCAAACAAAAGAATAAG |
| ERV24B_Prim | BPC5 | 5992 | 6021 | - | -47.06 | AGAACTAAGGATAAAAAGAAAGAAGTTTAG |
| ERV24B_Prim | BPC5 | 2003 | 2032 | + | -48.55 | TAAAGAAGAAAGAGAGAGAGAGGCCAAACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
