ERV24B_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000114 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7613 |
| Kimura value | 24.25 |
| Tau index | 0.5256 |
| Description | ERV1 retrotransposon, ERV24B_Prim subfamily |
| Comment | Autonomous ERV with LTR24B LTRs. ORFs: (roughly) gag 894-2234, pol 2235-5930, env 5962-6642. |
| Sequence |
TTTTGGCGACCCAGATGGGACCCGAAGCGAGCCTTCCGTCGATCCCCGCCGCTTCGCCGACAGCCGGGGCCCTGGTACCAGCACGAACGGCTTTCGTTCACCCGACCTCGCCGGAGCCGGCGGGGGTCTCTGGCGAGGCTCCTCTCGGGTTTCGAATCTCCCTGGTTTTGGCTGAGATTCAGACTTTATTCAAGCGACCCGATTCCACGCTCGACGGAGCTGGAATTGAAGCTCTACTGCTTTAAGGTAGGAGTTTCGTTTGTTATTTCTCTAGAGATTCTGCTGTTTGCAGGTTTGTGGTTTCACTTTTCTTTGAGGTTAAGGTTTTGTTTGTCTTACTTGCTAAAGTTTTGCAACCTTTTCTCTCGTTCGAAATTTGGTCAAGGAGAAAACAGTTTCTCTTTGAAAAGAGGAAGTGAATNTCTGTGGCTTAAGCAAAATTTGTGATCTTTAAAACTGGCCAGGTTCTGAAGCTCGGTTCAATTGACATATCTAAANTCTCTTCTTGAGTGACCAAAATTANAAAAAGCTTTCTATGAGGACGTGATAAGTCCCGAAGATAAGGGACACTGTTCCTCCCGGCCGAAAGGCACCTTAGGCGACTAAGGTCTCGCGGGAGTGTCGGAGCTCATCGCTCGTGACGTGCAACGGTCCCATAGGGAATCCCCAAAGAAGAACATACAGGGAANTTTGCTTAACCCGGTGGGCACACATAAGGGGCTGATCTCCCAGTGCCTTAAGCGCCCAGGATTCCTGGGTTTCACCGAGACACGTAAGAGGGGAGAAGCGACTCANGGGTGACACCTCGAGGAGTNATNCCCATTAAGCAGCACACTTGACCCAAAACATCTTTCCCTTTCAGTCTTTGGTCACTTAAGAAGAGAACCCAAATTATGGGCAATCGNCCATCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCTTTAGAAACNCCAGCTGGNTTTATGTACAACACTTATGGNGCCNCCTCTTGTAAATATCTAGGAAAATGGNCTCACNTAACCCGNGAAGANCCNAAATTACAATGGCCAAAATGGGGTACCTTTGAAATGCCTAAANTAATTTATTTGCGTGCNCAATTAGAAAAAGCCGGCTCTAGAATNAAACAAAATAANTGGGAGANTTACTTCCAATGGTACTTAGAAGCNTCCAAAAGAGGTTCTGANAAAGTTGCTTCCTTNCAGGAAGNAAACAAAAAGNTGTCTAAAACNATTTCTGAATTTAAAAAGACTGCTGAAGCTTCTCCTCCTCCTCCCTCAGCTCCTCCTTCTCTTTACCCTTTATTGTCTGAACTACCTTGCCCNGACCTACCTTCTCTTCCTCCTCCTCCTCCTGCTCCTGCTGTTCTGGCTCCATTTCNCGAACAGCCAGTGTCTGGTAGGGGAGAACCTGCCTTAGTTTATCAACCATGGTCAAAGGTAGAACTTAAAGGCATAATTAAGGAATTTCCTGATCCTCACCAGGACCCTATTGGTTTTGCCAGGGAATTTGAATTAAATATTCGAGCTTATGACCCTGGCTTTTCTGATTTNTATCAACTAGTTCACATGTTAGTNTCAGAAAGCAAGGCTAAAGATTGGNTAGATAAGGCNNACTGGAGAAATCCCTTAGAGGATTTTCATAAATGTTCAGAAGAAGACCGCAGACGTGCCCGTGAAACTGCAAAGGCTCTGCNTGAAGCCATTCCTTNAGTCTTCCAAAAGGTAGTNGACTGGAANAAAATACAACAATGTCGACAAAATCCAGATGAGTCNGTGATGNCATATTTTGAAAGATTTGAAAAAACNTTTAAACAATATTCAGGNTTATCTGAAGAAAGTTATGCTAATCATCAAAATGATACTCTCCTNAATTCCAATTTTATAAATGGGTTAGATGAAGAATTAGCACTAATAATAAAGAGACAACGCCCTAGTTGGGCCACTTCTCANACTCACGATTTGGTCAATCTTGCTGACCAGTTGTCTCGTACCTTAACTAAAGAAGAAAGAGAGAGAGAGGCCAAACAAAAGAATAAGGCTAATAAGATTATGAATTTACAACTAAAACAACTATCNACCCAGTCTGGACCTCCAAAATACCCCAATAAACCTCNGAACGGACCTAACCCTCCGCTTTGCAATTATTGCAAAAAACCTGGNCACTTTAAAAAGGATTGCAGAAAACTAAAACGGAGGGAACAACAACAGGCGAAGGAAAAAGGAAAATAGGGATGCTCCGAGGAACTTAAAGGGGCCTTTCCTTTCCTCCTTACTAACACTCTGGGAGAAATAGAAATTATTTTAAATGGAGAACAAACNCAAGCCCTCGTTGACACTGGAGCTACNCTNTCTGTNNTNAACCCCACCTTATTACAAGGCCCCNTTCCTCGGAGTAANNAAANAATTCAAATGGTGGGNGTCNCNAATACTCCTGTAACGGCATATAAATCTCAGCCTNTNNCTTTTCAACTAGGTCCCTTACAAGGNACTCATNTTTTCCTTTTGGTTCCNTCAGCCCCCATNCATCTNNTAGGAAGAGACTTCTTAGAANTNTATAATGCCCACATTTCCTTCTCCCAAAAGGGGAAAATGTATTTAGAATTAGATGANAAAACTGAATTACTAGACATAANAAATTTTTCAAAATCTGATCCTCAATTTACAATTGCAATCCATATTGCCATAGAAGACACTGAATTATTGAGTAATGAAGAATTACAAAANCTGCTAAAGGCAGTACCTGATCANTTATGGTCNAAGTCTTCCACTGATATNGGAAGAATTATNTCGGCTACCCCNATNAAAATTCAAATAGACCCATCNAAACCTCTNCCNAATNTTAAACAATATCCCCTAAAACCNGAAGCNNTAGAAGGAATNAAACCNATAATTNAAGATTATATAAAAAAAGGACTNATNATTCCCTGCACCAGCCCTTGTAATACTCCNATCCTNCCNGTAAAAAAACCNAATGGNNGAGGATGGAGATTTGTNCAAGACCTAAGAGCCATTAACAANATNGTNATTCCTCGNCATCCNGTAGTNCCAAACCCNCATACNTTNTTGNCTNCCATCCCNNCTGAAGGCGANTTCTTCACTGTNATNGATCTATGTAGTGCNTTCTTTAGCATTCCTGTNGATNAAGACAGTCAATATCTNTTTGCCTTCACTTGGGAAGACCGACAATACACCTGGACAGTCATGCCTCAGGGNTATACTGAAAGCCCNNCTTACTTTTCNCAAATATTAAAAGCAGACCTNNCAGACGTTGACTTCCCTAAGAAATCTACTCTNATNCAATATGTAGATGATTTNCTNCTNTGCTCAGAGGATAAGCAAGCCTCTATAGAAGACGGNATTCACTTGTTACAACAATTAGCNNNAAAGGGACACAAGGTTTCNAAAGAAAAACTNCAATTTTGTCAAAAACAAGTNAAATATTTGGGACATTTAATNTCNAAGGAAGGACTTCTTATNAATCCAGANAGACTAAAAGGAATNTTAGCTTTCCCCACCCCGANAACCAAGAGACAACTNAGAGGGTTTCTGGGACTNGCAGGATACTGTNGAAACTGGATNCCNAATTTTTCTTTAATGGCTCAGCCCTTATATGCTCTCTTAAAACAAGACANGCCAGACCCTCTAGANTGGACAGAAGAAAATCAACTAACATTAGAAATGATNAAAAATGACCTTACNAATGCCCCAGCTTTGGGNCATCCNAATTATAANCTTCCATTTTCNTTNTTTGTNCATGAAAGNAANGGAAACGCTTTAGGGGTCCTNACCCAAAAACATGGAGGCCAANATAGACCCGTNGGATATTATAGCCAGCAATTAGACCCNGTNGCTAAAGGACTNCCACCTTGCNTGAGAGCNATANCAGCCGCTGCCNTGTTAGTNAAGGCAACCGAAGAAATNGTNATGGGANCTCCCCTNACTGTTTNCGTNCCTCATTCTGTGGAAGCNCTNCTAAACTCNCACCACACTCAACATTTTTCNGTTAGCAGACTAGCTTCTTATGAAGTTTTNCTTCTTTCNGCTCCTCATATCACCATCTCTAGNTGTAACAATCTNAACCCTGCNACTCTTCTGCCTCCACCTTCAGATGAGACGCCGCACGACTGCGTAACCCTAACTGATCAACTTCTNNCTCCTAGGACAGATCTACAAGAGACTCCCCTNANNAACGCTGATGTTGTTTGGTTTACAGATGGATCNTATTTAAAGGATGAATCTGGAANNTACCGNGCAGGNTACGCTATAGTGTCTTTAACTGAAGNAATAGAAAGCGCTTACCTTCCAGAAGCCACNTCGGCCCAACAAGCAGAATTNATNGCNTTNACCAGAGCTTGTCANTTGGCNAAAGGAANAACTGCTAATATTTATACAGACAGCAGATATGCTTTTGGAGTAGCCCATGATTTTGGAATGCTATGGAAACAAAGAGGNTTTCTNACCTCTTCTGGNCAACCCATNAAAAATGGACACCNTATTTCACAATTNCTAGAAGCCATNTTATTACCAAAATCGCTGGCCATTATTAAAATTCCAGGNCATTCCAAATCAGATACTCCAGAAAGCAGAGGAAATCANCTAGCTGATAAGGTAGCAAAAAGNGCTGCTCTAAACGCATCTAAACAAGAAAANCAACCTATATTAACTTTTAAAGAAGCACCTGAATTTGACATAAAATTAGCTCAATCCAGAGCTCCAAAATCAGAACAGAAAAGTTGGAAAACAAAAGGGGGAANATATTCCCCCAAAGATGAGGTATGGTATGGGCCAAACGACTCGCCTATNCTTCCTGCTGAATTNCAGTTATCATTTTTAACCTATGTACATGATCTAACTCACTGGAGCCCTGACAAAATGATTGCTTGGGGAAAACAATATTGTTGGAAACCTTCTCCGACTATAGCTCATAAGGTNTACAATCGNTGTCNNATTTGTCCAAAATATAATCCAGGAAAACCNTTACACGGTTCCCAAGGACATTTTCCTTTACCCGANGGNCCNTTTGAAGTACGGCAANTGGATTTTATCCAGCTGCCACCNTCACAAGGNTACAAATATGTTCTGGTNATGATTTGCATGTTTTCTCATTGGGTAGAAGCNTTTCCATGCAGAAGAGCNACGGCCTTAGCAGTAAGTAAAATTCTNTTAGAAAANATTATTCCNNCNTGGGGAATTCCTCTGGAACTTCATAGCGACAGAGGNACTCATTTTACTGGACAGATNATTCAATCAGTATGTAAAATCTGGCCNATTCTCCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGATTGGTNGAACGNACAAACGGAATAATNAAAACTCAATTGGCAAAATTAACCGAGGCTTTTAAANTTCCTTGGCCAAAAGCTCTTCCATTGGTTTTGCTTAACCTAAGATCNACCCCTTTCGGNAAACACCAGTTATCNCCNTTTGAAATAATNACAGGCAGACCTATGAAATTGTCTCCAGGAAACTGTGCCTCCTTAATANTAAAAGGAGACATACTCNACTATTGTAANGGCCTTATNAAACAATTAACTAAAAATTATAANTTGGTAAAAGAATCTTTTCACAGTGAGCTCCCGGGAGACGAAGACCTCAAGNACCACGGNCTTCAGCCNGGNGATTTCGTCTACTGGAAANGACATCTNTTAAAGGACTCTCTCCAACCNCGNTGGAANGGNCCTTATCAGGTGCTNTTNACTAATCCTTGTGCTGCTAAGTTANAGGGCNTTGACTCCTGGATNCACGTNTCTCATCTAAAGAAGGCTGAGCCTCCTGAATGGACTGTTTCACCGGAAGGTGATCTCCGACTTAAGATAAGTCGACGCCAGGCCGAGAAGAAGATGACATCTGANGTAGACNGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAATGAATGCTTAATACTAACAATCGTTAATAGATGGGGAAGATTTTCCTTTACAAGCTCCCACTAAACTTCTTTCTTTTTATCCTTAGTTCTCATGTCTTGGTACTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTTTTGCAATGGGCCCAGGACTATGCTAATAGATTACAAAAAGACGCTTGCTGGGTATGTGGCCTCATGCCCCTTTCCAGTGGTTCTGGCCTACCATGGTGGGTATCTCCTCTCCAAGGACAAGACTGGATAGAATATCAGAAATATATCCGTNTTTCTCAAGAACAGTCATCGGTACTTAACACTAGTATGACTAAGGATAATGTACATCACTGGCCTATTAGTAATACTTTACAAAATAAGGGGCATAGGAAGAGCTTCTCGGTAAAAGAAACTAGTTCACTAGCTTTAACNCTGGCGCTGCCCCAGCTGAGAGACGAGACAATAACGCTGCCCCAATCGAAAGATAAGACAACTCAATTTCAGGATGGTATAACACAAATTTGGGACGGNTTTATCTGGCTTACCCCCTCCTTTGGCCAGCTTAGTCAGCNTGTCCCTTTATGTTGGGAACAGAAAAATCACACCAAAGATANCTGGCCCAACTGCACTAGAGATATGGGATGGATACCCAAAGAACGGTGTATCCGCACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATAGGCACAATAACCGAGTATTTATTGGTTAGCTCCAAATAGAACGTCTTGGCTATGTGGCACTAATCTATGGCCATGGTTACCCCCAGGATGGTTAGGACGATGTTCTTTGGGTTATGCTTGGGCACAAGGTCGAATAGTTCATACCCTGTCAAAACCCGCAAATTTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTGTTCCATTGGTATGATCATTTAGCTTCCATCTTTNTACCACAACTGGGTATTGAAGATGTCATTTGGCATGTAGAGGCCCTAACCAATTATACACAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAATAATGAAGTTACTCTCATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCTATCATAAAAACTGAATGCTGTGTCTATATCCCAGATGAATCAAATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACCAACCTTTCAGATCCAAAACCCTCTCTAAGCGACTGGCTAAGTAGCTGGTTTGGATCTTGGGGAACTTGGTGACAAAAACTGTTACTTATTCTAGGAATTATAATCATTTGTTGTGTTTTGTCCTGTTTTTGTCTACACTGCTGTTACGGCATTTGTTTGCAATNGAGTCAACGTACAACTGAAAAGGCTAGAGTGATGNTTGCCCAAAGAATTGCTTTAATTGAAGANGCAGTCGTGTAGCCTGAATCAGGTTCCAGGATTACTTCCCTTNTGTTGCTTTGTAATTCGGCCTTGGTCCNTCCGTTTTNTGACTTGTCCAATCCCCCCTCCCATGGGACATGACTTCCTAGGAATGAGCCTTCCTAGTGACGTGGGATTAGACTCNTGAACATAAAAGGAGTCAAAACTANTGAGTTCNTCTACGATGCTTTCTCCGAAAGATCTTGAAGAAAAGGGGGAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24B_Prim | TOD6 | 626 | 635 | + | 17.16 | AGCTCATCGC |
| ERV24B_Prim | AIL6 | 4985 | 4999 | - | 17.08 | CCTTGGGAACCGTGT |
| ERV24B_Prim | ZNF184 | 6136 | 6148 | - | 16.95 | TGGAAAGGGGCAT |
| ERV24B_Prim | DOF1.5 | 2216 | 2231 | + | 16.94 | GAAGGAAAAAGGAAAA |
| ERV24B_Prim | ASIL2 | 108 | 116 | - | 16.84 | CTCCGGCGA |
| ERV24B_Prim | ENAP2 | 108 | 116 | - | 16.79 | CTCCGGCGA |
| ERV24B_Prim | RAMOSA1 | 2008 | 2021 | + | 16.60 | AAGAAAGAGAGAGA |
| ERV24B_Prim | DOF4.3 | 5588 | 5600 | + | 16.44 | AAAAGAATCTTTT |
| ERV24B_Prim | Mecom | 6414 | 6424 | + | 16.44 | AGATAAGACAA |
| ERV24B_Prim | HLH4C | 6040 | 6053 | - | 16.34 | GCAACAGCTGGTGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
