Charlie15b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000090 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1061 |
| Kimura value | 29.14 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie15b subfamily (non-autonomous) |
| Comment | Charlie15b TSD is 'NNCTAGNN'. |
| Sequence |
CAGTGGTTTTCAAACTGTGTTCCGCGGAACCCTAGGGTTCCGCGGAGGTGCTTCAGGGGTTCCGCAAACGTTTGATTCGAATTTCATTTTTAAAATATATTTTAAACTATTTTNAAAACTGTAATAAAAAACAACACGCACACTCAAATGTGTTATATACCAAATTTTAACACATTGGAGACCACCAACGCGTTAACTTGTGCTGCCAGGTTAACTCGTTTTTGTGCAGACCTCGGAATAAAGCTTCTCCTGCCATCTCTGTGCATATATTTGAACTTCTTGTAAATGTGTCATTGATTAGGAAGGTTGTAGCTCTGCACTGGTCTTTTTAAAAATTCAGGCCTGCGCATGTCCGCTCACGTAAAATTGTACAAGCGAGTACACTACTACAGCACACGTGCGCCGCGCTCAATTAAATGCCAGGCAAGGCTCAGGCGCATCTGCTCGGCGCATGCTCTCGTCACGGCGTAATAGTCAGTTGTGCAATAACAAGTGAACGCGTAACACGTCGCGTCGTGATAATATCGTATTATAGATAGTTTTAGCGCTTATTGTAAGTTTTGGGTGCTTCTTGTCTGACTTTTATATTTATGATAAGGAATGCGAGCAGTTGTTAGATATTGTTAGTGATTCAACTTTGAAACAAAAATTTCCTACTACTCCTCTTTCAAGCTTCTGGATCAGTTTAATTGAAGAGTATCCTGAGATTGCAAGGCGAGCTGTTAAAAAACTGTTACCATTTGCAACTACTTATCTGTGTGAATCAGGATTTTCTCGATACTGTGCAACCAAAACAAAATACAGAAATAAATTGGATGCTGAGGCTGATATAAGACTGCAACTGTCATCCATAACCCCCGATTTCAAATTTTTGTGTTCATCAAAACAGCCTCATTGTTCTCATTGATTGACTTTATAATAAGTAAATGTTATAAATTTGAACTTATAAAATAAATTTATACTAATAAAATACCGCTTTTATCTGTTTTATATATTGGGGTTCCGCGTAAGATTTCATTTGAAAAAAGGATTCCGCTGCTAAAAAAGTTTGAAAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie15b | RXRB | 632 | 645 | - | 0.33 | TGTTTCAAAGTTGA |
| Charlie15b | IRF4 | 784 | 797 | + | -0.08 | TGCAACCAAAACAA |
| Charlie15b | TP63 | 346 | 363 | - | -1.05 | TACGTGAGCGGACATGCG |
| Charlie15b | TP63 | 346 | 363 | + | -1.91 | CGCATGTCCGCTCACGTA |
| Charlie15b | TP63 | 503 | 520 | + | -2.02 | AACACGTCGCGTCGTGAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
