Charlie15b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000090 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1061 |
| Kimura value | 29.14 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie15b subfamily (non-autonomous) |
| Comment | Charlie15b TSD is 'NNCTAGNN'. |
| Sequence |
CAGTGGTTTTCAAACTGTGTTCCGCGGAACCCTAGGGTTCCGCGGAGGTGCTTCAGGGGTTCCGCAAACGTTTGATTCGAATTTCATTTTTAAAATATATTTTAAACTATTTTNAAAACTGTAATAAAAAACAACACGCACACTCAAATGTGTTATATACCAAATTTTAACACATTGGAGACCACCAACGCGTTAACTTGTGCTGCCAGGTTAACTCGTTTTTGTGCAGACCTCGGAATAAAGCTTCTCCTGCCATCTCTGTGCATATATTTGAACTTCTTGTAAATGTGTCATTGATTAGGAAGGTTGTAGCTCTGCACTGGTCTTTTTAAAAATTCAGGCCTGCGCATGTCCGCTCACGTAAAATTGTACAAGCGAGTACACTACTACAGCACACGTGCGCCGCGCTCAATTAAATGCCAGGCAAGGCTCAGGCGCATCTGCTCGGCGCATGCTCTCGTCACGGCGTAATAGTCAGTTGTGCAATAACAAGTGAACGCGTAACACGTCGCGTCGTGATAATATCGTATTATAGATAGTTTTAGCGCTTATTGTAAGTTTTGGGTGCTTCTTGTCTGACTTTTATATTTATGATAAGGAATGCGAGCAGTTGTTAGATATTGTTAGTGATTCAACTTTGAAACAAAAATTTCCTACTACTCCTCTTTCAAGCTTCTGGATCAGTTTAATTGAAGAGTATCCTGAGATTGCAAGGCGAGCTGTTAAAAAACTGTTACCATTTGCAACTACTTATCTGTGTGAATCAGGATTTTCTCGATACTGTGCAACCAAAACAAAATACAGAAATAAATTGGATGCTGAGGCTGATATAAGACTGCAACTGTCATCCATAACCCCCGATTTCAAATTTTTGTGTTCATCAAAACAGCCTCATTGTTCTCATTGATTGACTTTATAATAAGTAAATGTTATAAATTTGAACTTATAAAATAAATTTATACTAATAAAATACCGCTTTTATCTGTTTTATATATTGGGGTTCCGCGTAAGATTTCATTTGAAAAAAGGATTCCGCTGCTAAAAAAGTTTGAAAACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie15b | Znf423 | 26 | 40 | + | 18.42 | GGAACCCTAGGGTTC |
| Charlie15b | Znf423 | 27 | 41 | - | 18.42 | GGAACCCTAGGGTTC |
| Charlie15b | BEH2 | 393 | 402 | + | 18.29 | CACACGTGCG |
| Charlie15b | BEH4 | 393 | 402 | - | 17.98 | CGCACGTGTG |
| Charlie15b | BEH3 | 393 | 402 | - | 17.79 | CGCACGTGTG |
| Charlie15b | PDR1 | 20 | 29 | + | 17.75 | TTCCGCGGAA |
| Charlie15b | PDR1 | 20 | 29 | - | 17.75 | TTCCGCGGAA |
| Charlie15b | ROX1 | 891 | 902 | + | 17.51 | CTCATTGTTCTC |
| Charlie15b | BZR1 | 393 | 402 | + | 17.48 | CACACGTGCG |
| Charlie15b | BZR1 | 393 | 402 | - | 16.62 | CGCACGTGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
