Charlie15b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000090 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1061 |
| Kimura value | 29.14 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie15b subfamily (non-autonomous) |
| Comment | Charlie15b TSD is 'NNCTAGNN'. |
| Sequence |
CAGTGGTTTTCAAACTGTGTTCCGCGGAACCCTAGGGTTCCGCGGAGGTGCTTCAGGGGTTCCGCAAACGTTTGATTCGAATTTCATTTTTAAAATATATTTTAAACTATTTTNAAAACTGTAATAAAAAACAACACGCACACTCAAATGTGTTATATACCAAATTTTAACACATTGGAGACCACCAACGCGTTAACTTGTGCTGCCAGGTTAACTCGTTTTTGTGCAGACCTCGGAATAAAGCTTCTCCTGCCATCTCTGTGCATATATTTGAACTTCTTGTAAATGTGTCATTGATTAGGAAGGTTGTAGCTCTGCACTGGTCTTTTTAAAAATTCAGGCCTGCGCATGTCCGCTCACGTAAAATTGTACAAGCGAGTACACTACTACAGCACACGTGCGCCGCGCTCAATTAAATGCCAGGCAAGGCTCAGGCGCATCTGCTCGGCGCATGCTCTCGTCACGGCGTAATAGTCAGTTGTGCAATAACAAGTGAACGCGTAACACGTCGCGTCGTGATAATATCGTATTATAGATAGTTTTAGCGCTTATTGTAAGTTTTGGGTGCTTCTTGTCTGACTTTTATATTTATGATAAGGAATGCGAGCAGTTGTTAGATATTGTTAGTGATTCAACTTTGAAACAAAAATTTCCTACTACTCCTCTTTCAAGCTTCTGGATCAGTTTAATTGAAGAGTATCCTGAGATTGCAAGGCGAGCTGTTAAAAAACTGTTACCATTTGCAACTACTTATCTGTGTGAATCAGGATTTTCTCGATACTGTGCAACCAAAACAAAATACAGAAATAAATTGGATGCTGAGGCTGATATAAGACTGCAACTGTCATCCATAACCCCCGATTTCAAATTTTTGTGTTCATCAAAACAGCCTCATTGTTCTCATTGATTGACTTTATAATAAGTAAATGTTATAAATTTGAACTTATAAAATAAATTTATACTAATAAAATACCGCTTTTATCTGTTTTATATATTGGGGTTCCGCGTAAGATTTCATTTGAAAAAAGGATTCCGCTGCTAAAAAAGTTTGAAAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie15b | IME1 | 40 | 47 | + | 14.59 | CCGCGGAG |
| Charlie15b | dsf | 577 | 584 | - | 14.52 | AAAAGTCA |
| Charlie15b | Sox7 | 892 | 901 | - | 14.49 | AGAACAATGA |
| Charlie15b | CEBPD | 479 | 486 | - | 14.47 | TTGCACAA |
| Charlie15b | ATHB-7 | 901 | 911 | + | 14.33 | TCATTGATTGA |
| Charlie15b | ZNF211 | 154 | 163 | + | 14.32 | TATATACCAA |
| Charlie15b | nit-4 | 21 | 27 | + | 14.25 | TCCGCGG |
| Charlie15b | nit-4 | 22 | 28 | - | 14.25 | TCCGCGG |
| Charlie15b | nit-4 | 39 | 45 | + | 14.25 | TCCGCGG |
| Charlie15b | nit-4 | 40 | 46 | - | 14.25 | TCCGCGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
