Charlie15b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000090 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1061 |
| Kimura value | 29.14 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie15b subfamily (non-autonomous) |
| Comment | Charlie15b TSD is 'NNCTAGNN'. |
| Sequence |
CAGTGGTTTTCAAACTGTGTTCCGCGGAACCCTAGGGTTCCGCGGAGGTGCTTCAGGGGTTCCGCAAACGTTTGATTCGAATTTCATTTTTAAAATATATTTTAAACTATTTTNAAAACTGTAATAAAAAACAACACGCACACTCAAATGTGTTATATACCAAATTTTAACACATTGGAGACCACCAACGCGTTAACTTGTGCTGCCAGGTTAACTCGTTTTTGTGCAGACCTCGGAATAAAGCTTCTCCTGCCATCTCTGTGCATATATTTGAACTTCTTGTAAATGTGTCATTGATTAGGAAGGTTGTAGCTCTGCACTGGTCTTTTTAAAAATTCAGGCCTGCGCATGTCCGCTCACGTAAAATTGTACAAGCGAGTACACTACTACAGCACACGTGCGCCGCGCTCAATTAAATGCCAGGCAAGGCTCAGGCGCATCTGCTCGGCGCATGCTCTCGTCACGGCGTAATAGTCAGTTGTGCAATAACAAGTGAACGCGTAACACGTCGCGTCGTGATAATATCGTATTATAGATAGTTTTAGCGCTTATTGTAAGTTTTGGGTGCTTCTTGTCTGACTTTTATATTTATGATAAGGAATGCGAGCAGTTGTTAGATATTGTTAGTGATTCAACTTTGAAACAAAAATTTCCTACTACTCCTCTTTCAAGCTTCTGGATCAGTTTAATTGAAGAGTATCCTGAGATTGCAAGGCGAGCTGTTAAAAAACTGTTACCATTTGCAACTACTTATCTGTGTGAATCAGGATTTTCTCGATACTGTGCAACCAAAACAAAATACAGAAATAAATTGGATGCTGAGGCTGATATAAGACTGCAACTGTCATCCATAACCCCCGATTTCAAATTTTTGTGTTCATCAAAACAGCCTCATTGTTCTCATTGATTGACTTTATAATAAGTAAATGTTATAAATTTGAACTTATAAAATAAATTTATACTAATAAAATACCGCTTTTATCTGTTTTATATATTGGGGTTCCGCGTAAGATTTCATTTGAAAAAAGGATTCCGCTGCTAAAAAAGTTTGAAAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie15b | PDR1 | 38 | 47 | - | 15.33 | CTCCGCGGAA |
| Charlie15b | BZR2 | 392 | 401 | - | 15.30 | GCACGTGTGC |
| Charlie15b | BEH2 | 393 | 402 | - | 15.26 | CGCACGTGTG |
| Charlie15b | BEH4 | 393 | 402 | + | 14.94 | CACACGTGCG |
| Charlie15b | USV1 | 52 | 61 | - | 14.90 | AACCCCTGAA |
| Charlie15b | ref-1 | 394 | 401 | + | 14.90 | ACACGTGC |
| Charlie15b | TCX3 | 934 | 945 | - | 14.80 | AAGTTCAAATTT |
| Charlie15b | PK15505.1 | 394 | 401 | - | 14.75 | GCACGTGT |
| Charlie15b | TCX2 | 75 | 89 | - | 14.63 | AAATGAAATTCGAAT |
| Charlie15b | TSO1 | 928 | 942 | + | 14.62 | TGTTATAAATTTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
