Charlie15b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000090 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1061 |
| Kimura value | 29.14 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie15b subfamily (non-autonomous) |
| Comment | Charlie15b TSD is 'NNCTAGNN'. |
| Sequence |
CAGTGGTTTTCAAACTGTGTTCCGCGGAACCCTAGGGTTCCGCGGAGGTGCTTCAGGGGTTCCGCAAACGTTTGATTCGAATTTCATTTTTAAAATATATTTTAAACTATTTTNAAAACTGTAATAAAAAACAACACGCACACTCAAATGTGTTATATACCAAATTTTAACACATTGGAGACCACCAACGCGTTAACTTGTGCTGCCAGGTTAACTCGTTTTTGTGCAGACCTCGGAATAAAGCTTCTCCTGCCATCTCTGTGCATATATTTGAACTTCTTGTAAATGTGTCATTGATTAGGAAGGTTGTAGCTCTGCACTGGTCTTTTTAAAAATTCAGGCCTGCGCATGTCCGCTCACGTAAAATTGTACAAGCGAGTACACTACTACAGCACACGTGCGCCGCGCTCAATTAAATGCCAGGCAAGGCTCAGGCGCATCTGCTCGGCGCATGCTCTCGTCACGGCGTAATAGTCAGTTGTGCAATAACAAGTGAACGCGTAACACGTCGCGTCGTGATAATATCGTATTATAGATAGTTTTAGCGCTTATTGTAAGTTTTGGGTGCTTCTTGTCTGACTTTTATATTTATGATAAGGAATGCGAGCAGTTGTTAGATATTGTTAGTGATTCAACTTTGAAACAAAAATTTCCTACTACTCCTCTTTCAAGCTTCTGGATCAGTTTAATTGAAGAGTATCCTGAGATTGCAAGGCGAGCTGTTAAAAAACTGTTACCATTTGCAACTACTTATCTGTGTGAATCAGGATTTTCTCGATACTGTGCAACCAAAACAAAATACAGAAATAAATTGGATGCTGAGGCTGATATAAGACTGCAACTGTCATCCATAACCCCCGATTTCAAATTTTTGTGTTCATCAAAACAGCCTCATTGTTCTCATTGATTGACTTTATAATAAGTAAATGTTATAAATTTGAACTTATAAAATAAATTTATACTAATAAAATACCGCTTTTATCTGTTTTATATATTGGGGTTCCGCGTAAGATTTCATTTGAAAAAAGGATTCCGCTGCTAAAAAAGTTTGAAAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie15b | PDR3 | 21 | 28 | + | 16.61 | TCCGCGGA |
| Charlie15b | PDR3 | 21 | 28 | - | 16.61 | TCCGCGGA |
| Charlie15b | PDR3 | 39 | 46 | + | 16.61 | TCCGCGGA |
| Charlie15b | PDR3 | 39 | 46 | - | 16.61 | TCCGCGGA |
| Charlie15b | GATA1::TAL1 | 751 | 767 | + | 16.47 | TTATCTGTGTGAATCAG |
| Charlie15b | BAM8 | 393 | 401 | + | 16.46 | CACACGTGC |
| Charlie15b | daf-12 | 132 | 145 | - | 15.63 | GAGTGTGCGTGTTG |
| Charlie15b | PDR1 | 38 | 47 | + | 15.57 | TTCCGCGGAG |
| Charlie15b | CEBPA | 478 | 487 | - | 15.42 | ATTGCACAAC |
| Charlie15b | Xrp1 | 478 | 487 | + | 15.41 | GTTGTGCAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
