Chap1a_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001209 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1038 |
| Kimura value | 29.37 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Chap1a_Mam subfamily |
| Comment | Present in Afrotheria, Xenarthra and humans, absent from marsupials. No apparent coding region. |
| Sequence |
CAGCGGTTCTCAACCGCGGTGTCGCGACACACTGGTGTGTCGCGATCAGTTGTGAGGTGTGTCGCAAGTAATTTGTTACTAATAATAGTTAAAGTACCGAAGTTTGCGAATGATTTACTTTTTTTAAATAAATTAGAGCGGATTCAAGGTTATCCCTATAATAACGTCACTCTCACTCACTTGCATTCCGATATGCTTTCTTGAGTGGGAGAGAAAGGGGTGGAGTTACAGCTAGCGCGCCGGGAATTGCGCATAACCCGCAGCCTATCTTATCTATGCCGCAGCCCGTAGTGAGCGACCGTTACTGATGTACCGTTAATAGTTGTGGCGATTACGAATTATTGTAGTGCTTGTGAGTTGTGATTTTATAGTTACTTCCGTTTTCTTTTTAATTTTACCCATGGATAAATTTTTAATAAGGAAGAAGGCAAGGATAGATGAAGAAAGCATGAGTAGTGCATCTACATCTACATTGCACGTGAGCAAGAATGATGCTATGAACATTTCTGTTAGTAACGACACAACAGTTATGATTACCAAATCAAAGGCAGACAAAGTGATGATGCAAGTGAAATTTGCAATAACGCTATTCATATTAATAATGTTAAAAATCTGTAAATTCTATGTATTGTAATTTTAAACAATAAAATAAGGTTTATTTATGCTTATTCTTCAATAGTACATACTTGCTCGCCTTATTAATATTACCTGTGGAGTGGAGGTCTGGAAAAAAATCAAGACTCATTTTNAAAAATAAAGTTCAATATTTTAAAAAATTAGATTAGCCATATTTATTTACTTTTCCTTGTAAAATGACAATTTTTGAGATCTTTAAATGGCTGATTTCATTACTCACATGCTTATAAAATGCTTTTATGAATACCACGCCAAAAAAAAGTCTGTGGCGCTATTTGCTTTACTTCCCCGCAAAATTTTTTNGGGTTTCGTCAAAATCTGGGTACGCCCATGGGAGTGTGTCGCGCATGTGAACGTCATCCGTCATGTGTGTCGCGGCGGAAAAAAGGTTGAGAACCGCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Chap1a_Mam | FOXD3 | 789 | 802 | - | 15.29 | AAAGTAAATAAATA |
| Chap1a_Mam | SFP1 | 929 | 938 | - | 15.11 | AAAAAATTTT |
| Chap1a_Mam | MEF2B | 78 | 89 | + | 14.91 | ACTAATAATAGT |
| Chap1a_Mam | DOF5.8 | 786 | 804 | + | 14.80 | CCATATTTATTTACTTTTC |
| Chap1a_Mam | ATF4 | 560 | 569 | + | 14.71 | ATGATGCAAG |
| Chap1a_Mam | Crg-1 | 792 | 802 | - | 14.56 | AAAGTAAATAA |
| Chap1a_Mam | PK09702.1 | 475 | 482 | + | 14.56 | GCACGTGA |
| Chap1a_Mam | NKX2-2 | 201 | 208 | - | 14.54 | CCACTCAA |
| Chap1a_Mam | DOF1.7 | 113 | 123 | - | 14.47 | AAAAAGTAAAT |
| Chap1a_Mam | sens | 357 | 366 | - | 14.46 | AAATCACAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
