Chap1a_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001209 |
|---|---|
| TE superfamily | Charlie |
| TE order | DNA |
| Species | Eutheria |
| Length | 1038 |
| Kimura value | 29.37 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Chap1a_Mam subfamily |
| Comment | Present in Afrotheria, Xenarthra and humans, absent from marsupials. No apparent coding region. |
| Sequence |
CAGCGGTTCTCAACCGCGGTGTCGCGACACACTGGTGTGTCGCGATCAGTTGTGAGGTGTGTCGCAAGTAATTTGTTACTAATAATAGTTAAAGTACCGAAGTTTGCGAATGATTTACTTTTTTTAAATAAATTAGAGCGGATTCAAGGTTATCCCTATAATAACGTCACTCTCACTCACTTGCATTCCGATATGCTTTCTTGAGTGGGAGAGAAAGGGGTGGAGTTACAGCTAGCGCGCCGGGAATTGCGCATAACCCGCAGCCTATCTTATCTATGCCGCAGCCCGTAGTGAGCGACCGTTACTGATGTACCGTTAATAGTTGTGGCGATTACGAATTATTGTAGTGCTTGTGAGTTGTGATTTTATAGTTACTTCCGTTTTCTTTTTAATTTTACCCATGGATAAATTTTTAATAAGGAAGAAGGCAAGGATAGATGAAGAAAGCATGAGTAGTGCATCTACATCTACATTGCACGTGAGCAAGAATGATGCTATGAACATTTCTGTTAGTAACGACACAACAGTTATGATTACCAAATCAAAGGCAGACAAAGTGATGATGCAAGTGAAATTTGCAATAACGCTATTCATATTAATAATGTTAAAAATCTGTAAATTCTATGTATTGTAATTTTAAACAATAAAATAAGGTTTATTTATGCTTATTCTTCAATAGTACATACTTGCTCGCCTTATTAATATTACCTGTGGAGTGGAGGTCTGGAAAAAAATCAAGACTCATTTTNAAAAATAAAGTTCAATATTTTAAAAAATTAGATTAGCCATATTTATTTACTTTTCCTTGTAAAATGACAATTTTTGAGATCTTTAAATGGCTGATTTCATTACTCACATGCTTATAAAATGCTTTTATGAATACCACGCCAAAAAAAAGTCTGTGGCGCTATTTGCTTTACTTCCCCGCAAAATTTTTTNGGGTTTCGTCAAAATCTGGGTACGCCCATGGGAGTGTGTCGCGCATGTGAACGTCATCCGTCATGTGTGTCGCGGCGGAAAAAAGGTTGAGAACCGCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Chap1a_Mam | ZBED1 | 20 | 31 | + | 16.93 | TGTCGCGACACA |
| Chap1a_Mam | Mecom | 265 | 275 | - | 16.91 | AGATAAGATAG |
| Chap1a_Mam | DOF3.6 | 381 | 401 | + | 16.50 | TTTTCTTTTTAATTTTACCCA |
| Chap1a_Mam | INO4 | 982 | 990 | + | 16.24 | GCATGTGAA |
| Chap1a_Mam | INO2 | 982 | 990 | + | 16.20 | GCATGTGAA |
| Chap1a_Mam | SPL8D1 | 676 | 685 | + | 16.19 | ATAGTACATA |
| Chap1a_Mam | ETV5::HOXA2 | 369 | 380 | - | 15.89 | CGGAAGTAACTA |
| Chap1a_Mam | Hand1 | 720 | 728 | - | 15.61 | TCCAGACCT |
| Chap1a_Mam | SPIC | 373 | 385 | - | 15.46 | GAAAACGGAAGTA |
| Chap1a_Mam | FLI1::DRGX | 369 | 382 | - | 15.42 | AACGGAAGTAACTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
