TE_95
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluYk3 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 12.40 |
| Counts of samples | TCGA_tumor:32; TCGA_normal:1; GTEx:1 |
| TSS | chr1(-):9642710 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_95.1 | - | Intergenic | Other | MVCGNLSGRLPVSLFSSDRIFPRPIFRLIRSLRESLCLHPLLTHVELLYFFIYLFIYLFILRQSLALLPRLEYNGAVSTHCNLYLPGSSNSPASASRVAGTTGACHHGWLIIFVFLVETGFHHVGQAGLEVLTSSDPPALASQSAGSHGAQPRTSLQVYGFYRRTTFQRYSRVCSLSKEPSQNMQRNIFWGGRF* | chr1(-):9637000,9637020,9637420,9642069,9642690,9642711 |
| teRNA_95.2 | - | Intergenic | Other | MVCGNLSGRLPVSLFSSDRIFPRPIFRLIRSLRESLCLHPLLTHVELLYFFIYLFIYLFILRQSLALLPRLEYNGAVSTHCNLYLPGSSNSPASASRVAGTTGACHHGWLIIFVFLVETGFHHVGQAGLEVLTSSDPPALASQSAGSHGAQPRTSLQVYGFYRRTTFQRYSRVCSLSKEPSQNMQRNIFWGGRF* | chr1(-):9636091,9636111,9636308,9642069,9642690,9642711 |
| teRNA_95.3 | - | Intergenic | Other | MVCGNLSGRLPVSLFSSDRIFPRPIFRLIRSLRESLCLHPLLTHVELLYFFIYLFIYLFILRQSLALLPRLEYNGAVSTHCNLYLPGSSNSPASASRVAGTTGACHHGWLIIFVFLVETGFHHVGQAGLEVLTSSDPPALASQSAGSHGAQPRTSLQVYGFYRRTTFQRYSRVCSLSKEPSQNMQRNIFWGGRF* | chr1(-):9632834,9632854,9633167,9642069,9642690,9642711 |
| teRNA_95.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):9639829,9639849,9640468,9642069,9642690,9642711 |
| teRNA_95.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):9639829,9639849,9640468,9642029,9642690,9642711 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
