TE_90
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2b_3end |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 1.81 |
| Counts of samples | TCGA_tumor:89; TCGA_normal:3; GTEx:52 |
| TSS | chr1(-):9381232 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_90.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):9374839,9374859,9380924,9381233 |
| teRNA_90.2 | - | Intergenic | Non-coding | Non-coding | chr1(-):9374843,9374863,9380924,9381233 |
| teRNA_90.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):9372368,9372388,9380924,9381233 |
| teRNA_90.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):9373262,9373282,9380924,9381233 |
| teRNA_90.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):9373357,9373377,9380924,9381233 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
