TE_89
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2b_3end |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 4.89 |
| Counts of samples | TCGA_tumor:268; TCGA_normal:5; GTEx:56 |
| TSS | chr1(-):9318811 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_89.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):9316150,9316170,9318618,9318812 |
| teRNA_89.2 | - | Intergenic | Non-coding | Non-coding | chr1(-):9317948,9317968,9318618,9318812 |
| teRNA_89.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):9317756,9317776,9318618,9318812 |
| teRNA_89.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):9317236,9317256,9318618,9318812 |
| teRNA_89.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):9316867,9316887,9318618,9318812 |
| teRNA_89.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):9316988,9317008,9318618,9318812 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
