TE_88
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSq2 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Other |
| Tumor-specific score | 3.38 |
| Counts of samples | TCGA_tumor:26; TCGA_normal:1; GTEx:7 |
| TSS | chr1(-):9184419 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_88.1 | - | Intergenic | Other | MQNPLKMSLLRHQPIPHQGIWYLPKGRFCHEPGVRQGPKTPSTCRCDWKANHLYMGTGRERTALGGPHMFLGPAVGYPPTFRHWVLTLFIKTLCVESLPCGWKEVGFLQERMAQCGELVSAWLLSLPLPAPLHPRSLVHPQVWQPLQSTRTPDGGYRELCFSHVTQRGSKGTSPSSPLETLLLFAFAPYILFLIFFYFLETGFHHVAPAGFELLGSSDLPALASQSSGITGMSHCAQPCTIYS* | chr1(-):9167032,9167052,9168140,9169371,9184265,9184420 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
