TE_80
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1MEd_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | SLC2A5 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.98 |
| Counts of samples | TCGA_tumor:673; TCGA_normal:49; GTEx:724 |
| TSS | chr1(-):9049291 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_80.1 | SLC2A5 | Chimeric | Other | MLELHSLTASSIMRVLIMRAPLREAPPEKFALLLSGSPGKGALLFNNIFSIVPAILMGCSRVATSFELIIISRLLVGICAGVSSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQIFGLRNLLANVDGWPILLGLTGVPAALQLLLLPFFPESPRYLLIQKKDEAAAKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLSIIVLMGGQQLSGVNAIYYYADQIYLSAGVPEEHVQYVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFSICLIACCVLTAALALQDTVSWMPYISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHWLSNFTVGLIFPFIQEGLGPYS | chr1(-):9037769,9037789,9037897,9038024,9038431,9038506,9038828,9038929,9039552,9039662,9039800,9039987,9040064,9040189,9041785,9041937,9047610,9047734,9049100,9049292 |
| teRNA_80.2 | SLC2A5 | Chimeric | Non-coding | Non-coding | chr1(-):9041917,9041937,9047610,9047734,9049100,9049292 |
| teRNA_80.3 | SLC2A5 | Chimeric | Non-coding | Non-coding | chr1(-):9047714,9047734,9049100,9049292 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
