TE_76
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2 |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | RERE |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.53 |
| Counts of samples | TCGA_tumor:205; TCGA_normal:114; GTEx:319 |
| TSS | chr1(-):8464482 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_76.1 | RERE | Chimeric | Other | MFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEG | chr1(-):8355100,8355120,8355419,8355599,8356100,8356246,8358196,8358916,8359764,8359986,8360112,8361490,8361763,8361876,8362683,8362844,8364056,8364255,8364746,8364838,8365812,8365974,8422727,8422807,8464351,8464483 |
| teRNA_76.2 | RERE | Chimeric | Non-coding | Non-coding | chr1(-):8355100,8355120,8355419,8355599,8364746,8364838,8365812,8365974,8422727,8422807,8464351,8464483 |
| teRNA_76.3 | RERE | Chimeric | Non-coding | Non-coding | chr1(-):8361470,8361490,8361763,8361876,8362683,8362844,8364056,8364255,8364746,8364838,8365812,8365974,8422727,8422807,8464351,8464483 |
| teRNA_76.4 | RERE | Chimeric | Non-coding | Non-coding | chr1(-):8364235,8364255,8364746,8364838,8365812,8365974,8422727,8422807,8464351,8464483 |
| teRNA_76.5 | RERE | Chimeric | Non-coding | Non-coding | chr1(-):8365954,8365974,8422727,8422807,8464351,8464483 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
