TE_7317
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1M3_orf2, L1P3_orf2 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | CD86 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 213.02 |
| Counts of samples | TCGA_tumor:188; TCGA_normal:0; GTEx:0 |
| TSS | chr3(+):122047980 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_7317.1 | CD86 | Chimeric | Other | MLAVGFSHIPFIMLSTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTIEYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREKIHIP | chr3(+):122047981,122048113,122091601,122091650,122103512,122103847,122106198,122106500,122109265,122109408,122118048,122118093,122119438,122119458 |
| teRNA_7317.2 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122091601,122091650,122106198,122106500,122109265,122109408,122118048,122118093,122119438,122119458 |
| teRNA_7317.3 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122091601,122091735,122103512,122103532 |
| teRNA_7317.4 | CD86 | Chimeric | Other | MLAVGFSHIPFIMLSTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTIEYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIGTNTMEREESEQTKKREKIHIP | chr3(+):122047981,122048113,122091601,122091650,122103512,122103847,122106198,122106500,122118048,122118093,122119438,122119458 |
| teRNA_7317.5 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122091601,122091650,122103512,122103847,122106198,122106218 |
| teRNA_7317.6 | CD86 | Chimeric | Other | MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTIEYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREKIHIP | chr3(+):122047981,122048113,122055422,122055503,122091601,122091650,122103512,122103847,122106198,122106500,122109265,122109408,122118048,122118093,122119438,122119458 |
| teRNA_7317.7 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122055422,122055503,122103512,122103847,122106198,122106500,122109265,122109408,122118048,122118093,122119438,122119458 |
| teRNA_7317.8 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122055422,122055503,122091601,122091650,122106198,122106500,122109265,122109408,122118048,122118093,122119438,122119458 |
| teRNA_7317.9 | CD86 | Chimeric | Non-coding | Non-coding | chr3(+):122047981,122048113,122055422,122055503,122091601,122091621 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
