TE_69
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1MEg_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | DNAJC11 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.49 |
| Counts of samples | TCGA_tumor:450; TCGA_normal:36; GTEx:996 |
| TSS | chr1(-):6640809 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_69.1 | DNAJC11 | Chimeric | Non-coding | Non-coding | chr1(-):6635680,6635700,6636117,6636246,6637198,6637340,6637447,6637504,6638295,6638364,6639902,6640057,6640703,6640810 |
| teRNA_69.2 | DNAJC11 | Chimeric | Non-coding | Non-coding | chr1(-):6635680,6635700,6636117,6636246,6637198,6637340,6637447,6638364,6639902,6640057,6640703,6640810 |
| teRNA_69.3 | DNAJC11 | Chimeric | Other | MFYATVGPLVVYFAMHRLIIKPYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGENMCPLLVQGGRWGSLSHTRRCLEEAFLYSESVLRPHHRQCLVREVCQ* | chr1(-):6635680,6635700,6636117,6636246,6637198,6637504,6638295,6638364,6639902,6640057,6640703,6640810 |
| teRNA_69.4 | DNAJC11 | Chimeric | Non-coding | Non-coding | chr1(-):6635680,6635700,6636117,6636246,6637198,6637340,6637447,6637504,6638083,6638364,6639902,6640057,6640703,6640810 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
