TE_6565
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 162.30 |
| Counts of samples | TCGA_tumor:143; TCGA_normal:0; GTEx:0 |
| TSS | chr2(-):221984948 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_6565.1 | - | Intergenic | Non-coding | Non-coding | chr2(-):221906536,221906556,221908122,221908266,221984822,221984949 |
| teRNA_6565.2 | - | Intergenic | Non-coding | Non-coding | chr2(-):221906532,221906552,221908122,221908266,221984822,221984949 |
| teRNA_6565.3 | - | Intergenic | Non-coding | Non-coding | chr2(-):221906580,221906600,221908122,221908266,221984822,221984949 |
| teRNA_6565.4 | - | Intergenic | Non-coding | Non-coding | chr2(-):221865440,221865460,221908122,221908266,221984822,221984949 |
| teRNA_6565.5 | - | Intergenic | Non-coding | Non-coding | chr2(-):221852699,221852719,221944161,221944265,221984822,221984949 |
| teRNA_6565.6 | - | Intergenic | Non-coding | Non-coding | chr2(-):221933371,221933391,221945885,221945969,221984822,221984949 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
