TE_63
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1MB7_3end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | ACOT7 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 7.46 |
| Counts of samples | TCGA_tumor:138; TCGA_normal:6; GTEx:14 |
| TSS | chr1(-):6361300 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_63.1 | ACOT7 | Chimeric | Non-coding | Non-coding | chr1(-):6264675,6264695,6281102,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6361169,6361301 |
| teRNA_63.2 | ACOT7 | Chimeric | Other | MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAHVMPAGADHTAPSSSPSTGTKCSLLRHHHLGTHDLHEQ* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282796,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6361169,6361301 |
| teRNA_63.3 | ACOT7 | Chimeric | Other | MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAP* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282888,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6361169,6361301 |
| teRNA_63.4 | ACOT7 | Chimeric | Non-coding | Non-coding | chr1(-):6281266,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6361169,6361301 |
| teRNA_63.5 | ACOT7 | Chimeric | Other | MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVPETEDEK | chr1(-):6264675,6264695,6281102,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360858,6360935,6361169,6361301 |
| teRNA_63.6 | ACOT7 | Chimeric | Other | MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAHVMPAGADHTAPSSSPSTGTKCSLLRHHHLGTHDLHEQ* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282796,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360858,6360935,6361169,6361301 |
| teRNA_63.7 | ACOT7 | Chimeric | Other | MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAP* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282888,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360858,6360935,6361169,6361301 |
| teRNA_63.8 | ACOT7 | Chimeric | Non-coding | Non-coding | chr1(-):6281266,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360858,6360935,6361169,6361301 |
| teRNA_63.9 | ACOT7 | Chimeric | Other | MLLLRRSLSLNVLRKEVDRACFGEKAKQIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVPETEDEK | chr1(-):6264675,6264695,6281102,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360570,6360688,6360858,6360935,6361169,6361301 |
| teRNA_63.10 | ACOT7 | Chimeric | Other | MPAWRDEAKSKGHSIGAQAHSLSSIWLQLLEGADRRRGETMLLLRRSLSLNVLRKEVDRACFGEKAKQIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVPETEDEK | chr1(-):6264675,6264695,6281102,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6360570,6360935,6361169,6361301 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
