TE_62
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1B |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Gene | ACOT7 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 1.42 |
| Counts of samples | TCGA_tumor:381; TCGA_normal:14; GTEx:289 |
| TSS | chr1(-):6356238 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_62.1 | ACOT7 | Chimeric | Other | MSRLPCSYKDTSHWVRALPKARRPHLDCIWMQRTLFKIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVPETEDEK | chr1(-):6264675,6264695,6281102,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6356059,6356239 |
| teRNA_62.2 | ACOT7 | Chimeric | Other | MSRLPCSYKDTSHWVRALPKARRPHLDCIWMQRTLFKIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAHVMPAGADHTAPSSSPSTGTKCSLLRHHHLGTHDLHEQ* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282796,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6356059,6356239 |
| teRNA_62.3 | ACOT7 | Chimeric | Other | MSRLPCSYKDTSHWVRALPKARRPHLDCIWMQRTLFKIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKAP* | chr1(-):6264675,6264695,6281102,6281286,6282724,6282888,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6356059,6356239 |
| teRNA_62.4 | ACOT7 | Chimeric | Non-coding | Non-coding | chr1(-):6281266,6281286,6294864,6294980,6318492,6318578,6327299,6327413,6333477,6333568,6339433,6339589,6349749,6349866,6356059,6356239 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
