TE_6136
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | CCDC148 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 215.28 |
| Counts of samples | TCGA_tumor:190; TCGA_normal:0; GTEx:0 |
| TSS | chr2(-):158351599 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_6136.1 | CCDC148 | Chimeric | Other | MESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRL | chr2(-):158172239,158172259,158176521,158176661,158178879,158178996,158220595,158220713,158250772,158250912,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158351558,158351600 |
| teRNA_6136.2 | CCDC148 | Chimeric | Other | MKRTLEMNVFVTLQILVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRL | chr2(-):158172239,158172259,158176521,158176661,158178879,158178996,158220595,158220713,158250772,158250912,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340598,158340680,158351558,158351600 |
| teRNA_6136.3 | CCDC148 | Chimeric | Other | MESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKSQVCLYQ | chr2(-):158288816,158288836,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158351558,158351600 |
| teRNA_6136.4 | CCDC148 | Chimeric | Non-coding | Non-coding | chr2(-):158338887,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158351558,158351600 |
| teRNA_6136.5 | CCDC148 | Chimeric | Other | MLTSKLSKEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRL | chr2(-):158172239,158172259,158176521,158176661,158178879,158178996,158220595,158220713,158250772,158250912,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158345215,158345318,158351558,158351600 |
| teRNA_6136.6 | CCDC148 | Chimeric | Other | MLTSKLSKEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKSQVCLYQ | chr2(-):158288816,158288836,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158345215,158345318,158351558,158351600 |
| teRNA_6136.7 | CCDC148 | Chimeric | Non-coding | Non-coding | chr2(-):158338887,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158345215,158345318,158351558,158351600 |
| teRNA_6136.8 | CCDC148 | Chimeric | Non-coding | Non-coding | chr2(-):158172239,158172259,158176521,158176661,158178879,158178996,158220595,158220713,158250772,158250912,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158351558,158351600 |
| teRNA_6136.9 | CCDC148 | Chimeric | Non-coding | Non-coding | chr2(-):158288816,158288836,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158351558,158351600 |
| teRNA_6136.10 | CCDC148 | Chimeric | Other | MIRKAMLTSKLSKEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRL | chr2(-):158172239,158172259,158176521,158176661,158178879,158178996,158220595,158220713,158250772,158250912,158309433,158309639,158313756,158313894,158338726,158338907,158338990,158339085,158340242,158340393,158340598,158340680,158345215,158345318,158351226,158351336,158351558,158351600 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
