TE_5933
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 261.49 |
| Counts of samples | TCGA_tumor:231; TCGA_normal:0; GTEx:0 |
| TSS | chr2(-):117649655 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_5933.1 | - | Intergenic | Non-coding | Non-coding | chr2(-):117439304,117439324,117490977,117491058,117648849,117648885,117649528,117649656 |
| teRNA_5933.2 | - | Intergenic | Non-coding | Non-coding | chr2(-):117439304,117439324,117501458,117501554,117648849,117648885,117649528,117649656 |
| teRNA_5933.3 | - | Intergenic | Non-coding | Non-coding | chr2(-):117439304,117439324,117490977,117491058,117501458,117501554,117648849,117648885,117649528,117649656 |
| teRNA_5933.4 | - | Intergenic | Non-coding | Non-coding | chr2(-):117487096,117487116,117490977,117491058,117501458,117501554,117648849,117648885,117649528,117649656 |
| teRNA_5933.5 | - | Intergenic | Non-coding | Non-coding | chr2(-):117612286,117612306,117619544,117619642,117648849,117648885,117649528,117649656 |
| teRNA_5933.6 | - | Intergenic | Non-coding | Non-coding | chr2(-):117498058,117498078,117501458,117501554,117623235,117623482,117648849,117648885,117649528,117649656 |
| teRNA_5933.7 | - | Intergenic | Non-coding | Non-coding | chr2(-):117498058,117498078,117501458,117501554,117648849,117648885,117649528,117649656 |
| teRNA_5933.8 | - | Intergenic | Non-coding | Non-coding | chr2(-):117612286,117612306,117623235,117623596,117649528,117649656 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
