TE_50
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1MC5a_3end |
|---|---|
| TE superfamily | L1 |
| TE order | LINE |
| Gene | NPHP4 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.95 |
| Counts of samples | TCGA_tumor:695; TCGA_normal:28; GTEx:795 |
| TSS | chr1(-):5896813 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_50.11 | NPHP4 | Chimeric | Non-coding | Non-coding | chr1(-):5879612,5879632,5880114,5880239,5896655,5896814 |
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2
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
