TE_4961
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | SVA_B |
|---|---|
| TE superfamily | SVA |
| TE class | Retroposon |
| Gene | WNT6, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 229.93 |
| Counts of samples | TCGA_tumor:203; TCGA_normal:0; GTEx:0 |
| TSS | chr2(+):218846576 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_4961.1 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218847872,218863999,218871027,218871247,218871485,218871819,218873384,218873404 |
| teRNA_4961.2 | WNT6 | Chimeric | Other | MRHRTGTRKEMTPPASACRAVQFDNPRRSTPRPRPTSSLASAPASPSAPPPAPNSLIPGKFSLFTVNKPVKRLPSSPSPIPQLLFLPPHPSLLFFPALPCPRLQAAASGGGLQVRERRGEGAKRAGPTARSALGPRPGTPLPPSAALRASRPGAHGSLPRVPLPDCRNCHLPPAPCPPPPPRPRSPPTSAPGSDFFSRASSAGDTGAGCPVRSPPPPRPPRPGWAPPPPPDPSPPGRRRCARRARTEARALARRGSPRSLAPCPPGRP* | chr2(+):218846577,218846722,218847872,218849680,218852918,218860117,218871027,218871247,218871485,218871819,218873384,218873404 |
| teRNA_4961.3 | WNT6 | Chimeric | Other | MRHRTGTRKEMTPPASACRAVQFDNPRRSTPRPRPTSSLASAPASPSAPPPAPNSLIPGKFSLFTVNKPVKRLPSSPSPIPQLLFLPPHPSLLFFPALPCPRLQAAASGGGLQVRERRGEGAKRAGPTARSALGPRPGTPLPPSAALRASRPGAHGSLPRVPLPDCRNCHLPPAPCPPPPPRPRSPPTSAPGSDFFSRASSAGDTGAGCPVRSPPPPRPPRPGWAPPPPPDPSPPGRRRCARRARTEARALARRGSPRSLAPCPPGRP* | chr2(+):218846577,218846722,218847872,218849680,218852918,218860117,218871485,218871505 |
| teRNA_4961.4 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218847872,218848577,218871027,218871247,218871485,218871819,218873384,218873404 |
| teRNA_4961.5 | - | Intergenic | Non-coding | Non-coding | chr2(+):218846577,218846722,218847817,218847923,218851984,218852004 |
| teRNA_4961.6 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218847817,218860117,218871027,218871247,218871485,218871819,218873384,218873404 |
| teRNA_4961.7 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218847817,218860117,218871485,218871505 |
| teRNA_4961.8 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218847817,218848577,218871027,218871247,218871485,218871819,218873384,218873404 |
| teRNA_4961.9 | WNT6 | Chimeric | Non-coding | Non-coding | chr2(+):218846577,218846722,218871027,218871247,218871485,218871819,218873384,218873404 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
