TE_38995
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJb |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 6.76 |
| Counts of samples | TCGA_tumor:17; TCGA_normal:1; GTEx:1 |
| TSS | chrY(-):56834679 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_38995.1 | - | Intergenic | Non-coding | Non-coding | chrY(-):56831041,56831061,56832467,56833200,56834548,56834680 |
| teRNA_38995.2 | - | Intergenic | Other | MEWSGVEWSGMQWNGVEWNGMEWNGMEWSGVEWNGVEWNGVEWNGMAWNGVEWNGVEWNGVEWNGMERSGVEWNGMEGSGVERSRVEWNGVEWSAMEWNGVESNGMGWSGMEWSGVE* | chrY(-):56830017,56830037,56830675,56833370,56834548,56834680 |
| teRNA_38995.3 | - | Intergenic | Non-coding | Non-coding | chrY(-):56830407,56830427,56830675,56832349,56834548,56834680 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
