TE_35110
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSz |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | NLRP7 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 315.59 |
| Counts of samples | TCGA_tumor:279; TCGA_normal:0; GTEx:0 |
| TSS | chr19(-):54938493 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_35110.1 | NLRP7 | Chimeric | Non-coding | Non-coding | chr19(-):54923852,54923872,54930499,54930666,54933569,54933739,54934489,54934659,54936261,54936431,54938044,54938241,54938349,54938494 |
| teRNA_35110.2 | NLRP7 | Chimeric | Non-coding | Non-coding | chr19(-):54923852,54923872,54927605,54927775,54930499,54930666,54933569,54933739,54934489,54934659,54936261,54936431,54938044,54938241,54938349,54938494 |
| teRNA_35110.3 | NLRP7 | Chimeric | Other | MMLMLCDLLRNHKCNLQYLRLGGHCATPEQWAEFFYVLKANQSLKHLRLSANVLLDEGAMLLYKTMTRPKHFLQMLSLENCRLTEASCKDLAAVLVVSKKLTHLCLAKNPIGDTGVKFLCEGLSYPDCKLQTLVLQQCSITKLGCRYLSEALQEACSLTNLDLSINQIARGLWILCQALENPNCNLKHLRILDLLSSAIRSLKLWTWARIICGRVA* | chr19(-):54923852,54923872,54927605,54927738,54930499,54930666,54933569,54933739,54934489,54934659,54936261,54936431,54938044,54938241,54938349,54938494 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
