TE_34891
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR36 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | -, CEACAM7 |
| Class | Chimeric, Intergenic |
| Coding | Annoated, Non-coding, Chimeric_truncated |
| Tumor-specific score | 217.53 |
| Counts of samples | TCGA_tumor:192; TCGA_normal:0; GTEx:0 |
| TSS | chr19(-):41742837 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_34891.1 | CEACAM7 | Chimeric | Non-coding | Non-coding | chr19(-):41684043,41684063,41686859,41687221,41703799,41703914,41742644,41742838 |
| teRNA_34891.2 | - | Intergenic | Non-coding | Non-coding | chr19(-):41735124,41735144,41742644,41742838 |
| teRNA_34891.3 | CEACAM7 | Chimeric | Chimeric_truncated | MDLSSLGDCLRTSILGHLGTHTLSEGASEAYPASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQNLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGIYTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVSIMIGVLAGMALI* | chr19(-):41674719,41674739,41677376,41677503,41683785,41684063,41686859,41687221,41742644,41742838 |
| teRNA_34891.4 | CEACAM7 | Chimeric | Chimeric_truncated | MDLSSLGDCLRTSILGHLGTHTLSEGASEAYPASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQNLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGIYTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVSIMIGVLAGMALI* | chr19(-):41674739,41674759,41677376,41677503,41683785,41684063,41686859,41687221,41742644,41742838 |
| teRNA_34891.5 | CEACAM7 | Chimeric | Non-coding | Non-coding | chr19(-):41677483,41677503,41686859,41687221,41742644,41742838 |
| teRNA_34891.6 | CEACAM7 | Chimeric | Non-coding | Non-coding | chr19(-):41684043,41684063,41686859,41687221,41742644,41742838 |
| teRNA_34891.7 | CEACAM7 | Chimeric | Chimeric_truncated | MDLSSLGDCLRTSILGHLGTHTLSEGASEAYPAEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVSIMIGVLAGMALI* | chr19(-):41674719,41674739,41677376,41677503,41683785,41684063,41742644,41742838 |
| teRNA_34891.8 | CEACAM7 | Chimeric | Chimeric_truncated | MDLSSLGDCLRTSILGHLGTHTLSEGASEAYPAEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVSIMIGVLAGMALI* | chr19(-):41674739,41674759,41677376,41677503,41683785,41684063,41742644,41742838 |
| teRNA_34891.9 | CEACAM7 | Chimeric | Non-coding | Non-coding | chr19(-):41684043,41684063,41742644,41742838 |
| teRNA_34891.10 | - | Intergenic | Non-coding | Non-coding | chr19(-):41711132,41711152,41742644,41742838 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
