TE_29333
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MER41-int, MER4-int |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | MFGE8, - |
| Class | Chimeric, Intergenic |
| Coding | Annoated, Non-coding, Other |
| Tumor-specific score | 198.37 |
| Counts of samples | TCGA_tumor:175; TCGA_normal:0; GTEx:0 |
| TSS | chr15(-):88939453 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_29333.1 | - | Intergenic | Non-coding | Non-coding | chr15(-):88935804,88935824,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
| teRNA_29333.2 | - | Intergenic | Non-coding | Non-coding | chr15(-):88936706,88936726,88937794,88939250,88939354,88939454 |
| teRNA_29333.3 | - | Intergenic | Non-coding | Non-coding | chr15(-):88935804,88935824,88936678,88936726,88936809,88939250,88939354,88939454 |
| teRNA_29333.4 | - | Intergenic | Non-coding | Non-coding | chr15(-):88935804,88935824,88936678,88936726,88936809,88936981,88939165,88939250,88939354,88939454 |
| teRNA_29333.5 | - | Intergenic | Non-coding | Non-coding | chr15(-):88935804,88935824,88936678,88936726,88939127,88939250,88939354,88939454 |
| teRNA_29333.6 | MFGE8 | Chimeric | Other | MPRPRLLAALCGALLCAPSLLVALDICSKNPCHNGGLCEEISQEVRGDVFPSYTCTCLKGYAGNHCETKCVEPLGLENGNIANSQIAASSVRVTFLGLQHWVPELARLNRAGMVNAWTPSSNDDNPWIQVNLLRRMWVTGVVTQGASRLASHEYLKAFKVAYSLNGHEFDFIHDVNKKHKEFVGNWNKNAVHVNLFETPVEAQYVRLYPTSCHTACTLRFELLGCELNGCANPLGLKNNSIPDKQITASSSYKTWGLHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWLQVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWD | chr15(-):88899512,88899532,88899656,88899811,88901551,88901735,88905757,88905901,88906626,88906778,88907195,88907376,88909792,88909923,88913247,88913609,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
| teRNA_29333.7 | MFGE8 | Chimeric | Other | MWPFPEGGNTIPILHTDICSKNPCHNGGLCEEISQEVRGDVFPSYTCTCLKGYAGNHCETKCVEPLGLENGNIANSQIAASSVRVTFLGLQHWVPELARLNRAGMVNAWTPSSNDDNPWIQVNLLRRMWVTGVVTQGASRLASHEYLKAFKVAYSLNGHEFDFIHDVNKKHKEFVGNWNKNAVHVNLFETPVEAQYVRLYPTSCHTACTLRFELLGCELNGCANPLGLKNNSIPDKQITASSSYKTWGLHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWLQVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWD | chr15(-):88899512,88899532,88899656,88899811,88901551,88901735,88905757,88905901,88906626,88906778,88907195,88907376,88909792,88909923,88912124,88912176,88913247,88913609,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
| teRNA_29333.8 | MFGE8 | Chimeric | Non-coding | Non-coding | chr15(-):88899512,88899532,88901551,88901671,88905757,88905901,88906626,88906778,88907195,88907376,88909792,88909923,88913247,88913609,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
| teRNA_29333.9 | MFGE8 | Chimeric | Non-coding | Non-coding | chr15(-):88899512,88899532,88901551,88901735,88905757,88905901,88906626,88906778,88907195,88907376,88909792,88909923,88913247,88913609,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
| teRNA_29333.10 | MFGE8 | Chimeric | Annoated | MPRPRLLAALCGALLCAPSLLVALDICSKNPCHNGGLCEEISQEVRGDVFPSYTCTCLKGYAGNHCETKCVEPLGLENGNIANSQIAASSVRVTFLGLQHWVPELARLNRAGMVNAWTPSSNDDNPWIQVNLLRRMWVTGVVTQGASRLASHEYLKAFKVAYSLNGHEFDFIHDVNKKHKEFVGNWNKNAVHVNLFETPVEAQYVRLYPTSCHTACTLRFELLGCELNGCANPLGLKNNSIPDKQITASSSYKTWGLHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWLQVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWDNHSHKKNLFETPILARYVRILPVAWHNRIALRLELLGC* | chr15(-):88899137,88899157,88899375,88899532,88899656,88899811,88901551,88901735,88905757,88905901,88906626,88906778,88907195,88907376,88909792,88909923,88913247,88913609,88936678,88936726,88936809,88936875,88939127,88939250,88939354,88939454 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
