TE_25847
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1PA15_3end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | SMCO2 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 208.51 |
| Counts of samples | TCGA_tumor:184; TCGA_normal:0; GTEx:0 |
| TSS | chr12(+):27461464 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_25847.1 | SMCO2 | Chimeric | Non-coding | Non-coding | chr12(+):27461465,27461490,27474786,27474913,27475582,27475731,27488460,27488547,27494300,27494356,27495680,27495855,27501923,27501943 |
| teRNA_25847.2 | SMCO2 | Chimeric | Non-coding | Non-coding | chr12(+):27461465,27461490,27474786,27474913,27488460,27488547,27494300,27494356,27495680,27495855,27501923,27501943 |
| teRNA_25847.3 | SMCO2 | Chimeric | Other | MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSENPQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELCLKGMFLKLNYWNTKIGLQVKELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRI | chr12(+):27461465,27461490,27470622,27470765,27472776,27472875,27474786,27474913,27475582,27475731,27488460,27488547,27494300,27494356,27495680,27495855,27501923,27501943 |
| teRNA_25847.4 | SMCO2 | Chimeric | Non-coding | Non-coding | chr12(+):27461465,27461490,27470622,27470765,27472776,27472875,27474786,27474913,27488460,27488547,27494300,27494356,27495680,27495855,27501923,27501943 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
