TE_22465
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | HERVH |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | PIK3AP1 |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 163.43 |
| Counts of samples | TCGA_tumor:144; TCGA_normal:0; GTEx:0 |
| TSS | chr10(-):96734431 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_22465.1 | PIK3AP1 | Chimeric | Other | MVVQPDRIRCGAETTVYVIVRCKLDDRVATEAEFSPEDSPSVRMEAKVENEYTISVKAPNLSSGNVSLKIYSGDLVVCETVISYYTDMEEIGNLLSNAANPVEFMCQAFKIVPYNTETLDKLLTESLKNNIPASGLHLFGINQLEEEDMMTNQRDEELPTLLHFAAKYGLKNLTALLLTCPGALQAYSVANKHGHYPNTIAEKHGFRDLRQFIDEYVETVDMLKSHIKEELMHGEEADAVYESMAHLSTDLLMKCSLNPGCDEDLYESMAAFVPAATEDLYVEMLQASTSNPIPGDGFSRATKDSMIRKFLEGNSMGMTNLERDQCHLGQEEDVYHTVDDDEAFSVDLASRPPVPVPRPETTAPGAHQLPDNEPYIFKVFAEKSQERPGNFYVSSESIRKGPPVRPWRDRPQSSIYDPFAGMKTPGQRQLITLQEQVKLGIVNVDEAVLHFKEWQLNQKKRSESFRFQQENLKRLRDSITRRQREKQKSGKQTDLEITVPIRHSQHLPAKVEFGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNRSSTRSLLSVSSGMEGDNEDNEVPEVTRSRSPGPPQVDGTPTMSLERPPRVPPRAASQRPPTRET | chr10(-):96595614,96595634,96602280,96602398,96603979,96604049,96609712,96609867,96616639,96616711,96620352,96620557,96623472,96623537,96626708,96626905,96628398,96628493,96645473,96645662,96648659,96648855,96651248,96651380,96651509,96651651,96652698,96652842,96656798,96656934,96709567,96709983,96734333,96734432 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
