TE_197
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MIR |
|---|---|
| TE superfamily | L2-end |
| TE class | SINE |
| Gene | CAPZB |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.87 |
| Counts of samples | TCGA_tumor:1218; TCGA_normal:17; GTEx:337 |
| TSS | chr1(-):19436034 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_197.1 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19339597,19339617,19344358,19344434,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.2 | CAPZB | Chimeric | Other | MRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDAIPDNQKFKQLQRELSQVLTQRQIYIQPDN* | chr1(-):19339597,19339617,19342752,19342864,19344358,19344434,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.3 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19339597,19339617,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.4 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19339597,19339617,19344358,19344434,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19412236,19417164,19419661,19419750,19435895,19436035 |
| teRNA_197.5 | CAPZB | Chimeric | Other | MRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEVSDLGSGWLLQ* | chr1(-):19339597,19339617,19344358,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.6 | CAPZB | Chimeric | Other | MRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEVSDLGSGWLLQ* | chr1(-):19339597,19339617,19342752,19342864,19344358,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.7 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19344414,19344434,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.8 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19342844,19342864,19344358,19344434,19345187,19345252,19356635,19356751,19357422,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
| teRNA_197.9 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19357543,19357563,19378540,19378653,19385505,19385626,19419661,19419750,19435895,19436035 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
