TE_186
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1MC4_3end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | -, IFFO2 |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.74 |
| Counts of samples | TCGA_tumor:58; TCGA_normal:4; GTEx:85 |
| TSS | chr1(-):19050940 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_186.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):18991425,18991445,18996990,18997059,19021137,19021270,19050878,19050941 |
| teRNA_186.2 | IFFO2 | Chimeric | Other | MNLQTMVDTLQEAAQEADAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKERKVASDDDISEQDGEVNRFSDDEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPS | chr1(-):18908646,18908666,18910342,18910472,18911384,18911476,18911963,18912083,18916903,18917042,18918362,18918502,18919678,18919773,18921061,18921121,18996990,18997059,19021157,19021270,19050878,19050941 |
| teRNA_186.3 | IFFO2 | Chimeric | Non-coding | Non-coding | chr1(-):18908646,18908666,18910342,18910472,18911384,18911476,18911963,18912083,18916903,18917042,18919678,18919773,18921061,18921121,18996990,18997059,19021157,19021270,19050878,19050941 |
| teRNA_186.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):18965876,18965896,18971140,18971289,18996990,18997059,19021157,19021270,19050878,19050941 |
| teRNA_186.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):18997039,18997059,19021137,19021270,19050878,19050941 |
| teRNA_186.6 | IFFO2 | Chimeric | Other | MNLQTMVDTLQEAAQEADAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKERKVASDDDISEQDGEVNRFSDDEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPS | chr1(-):18908646,18908666,18910342,18910472,18911384,18911476,18911963,18912083,18916903,18917042,18918362,18918502,18919678,18919773,18921061,18921121,18996990,18997059,19050878,19050941 |
| teRNA_186.7 | IFFO2 | Chimeric | Non-coding | Non-coding | chr1(-):18908646,18908666,18910342,18910472,18911384,18911476,18911963,18912083,18916903,18917042,18919678,18919773,18921061,18921121,18996990,18997059,19050878,19050941 |
| teRNA_186.8 | - | Intergenic | Non-coding | Non-coding | chr1(-):18990251,18990271,18996990,18997059,19037061,19037185,19050878,19050941 |
| teRNA_186.9 | - | Intergenic | Non-coding | Non-coding | chr1(-):19020085,19020105,19021137,19021270,19037061,19037185,19050878,19050941 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
