TE_182
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MIRc |
|---|---|
| TE superfamily | L2-end |
| TE class | SINE |
| Gene | ALDH4A1 |
| Class | Chimeric |
| Coding | Non-coding, Other, Truncated |
| Tumor-specific score | 1.89 |
| Counts of samples | TCGA_tumor:240; TCGA_normal:46; GTEx:97 |
| TSS | chr1(-):18890644 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_182.1 | ALDH4A1 | Chimeric | Truncated | MEAIPCVVGDEEVWTSDVQYQVSPFNHGHKVAKFCYADKSLLNKAIEAALAARKEWDLKPIADRAQIFLKAADMLSGPRRAEILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWSYAYMQ* | chr1(-):18871770,18871790,18872804,18872957,18874463,18874581,18875382,18875503,18876315,18876467,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18885473,18885628,18886464,18886511,18889362,18889454,18890012,18890105,18890570,18890645 |
| teRNA_182.2 | ALDH4A1 | Chimeric | Other | MEAIPCVVGDEEVWTSDVQYQVSPFNHGHKVAKFCYADKSLLNKAIEAALAARKEWDLKPIADRAQIFLKAADMLSGPRRAEILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG | chr1(-):18872937,18872957,18874463,18874581,18875382,18875503,18876315,18876467,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18885473,18885628,18886464,18886511,18889362,18889454,18890012,18890105,18890570,18890645 |
| teRNA_182.3 | ALDH4A1 | Chimeric | Other | MEAIPCVVGDEEVWTSDVQYQVSPFNHGHKVAKFCYADKSLLNKAIEAALAARKEWDLKPIADRAQIFLKAADMLSGPRRAEILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG | chr1(-):18872937,18872957,18874463,18874581,18875382,18875503,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18885473,18885628,18886464,18886511,18889362,18889454,18890012,18890105,18890570,18890645 |
| teRNA_182.4 | ALDH4A1 | Chimeric | Non-coding | Non-coding | chr1(-):18883178,18883198,18883279,18883428,18885473,18885628,18889362,18889454,18890012,18890105,18890570,18890645 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
