TE_180
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MIRb |
|---|---|
| TE superfamily | L2-end |
| TE class | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 5.79 |
| Counts of samples | TCGA_tumor:112; TCGA_normal:0; GTEx:21 |
| TSS | chr1(-):18607651 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_180.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):18600090,18600110,18607318,18607445,18607536,18607652 |
| teRNA_180.2 | - | Intergenic | Non-coding | Non-coding | chr1(-):18595394,18595414,18599897,18600110,18607318,18607445,18607536,18607652 |
| teRNA_180.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):18525642,18525662,18528640,18528998,18599897,18600103,18607318,18607445,18607536,18607652 |
| teRNA_180.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):18595114,18595134,18599897,18600103,18607318,18607445,18607536,18607652 |
| teRNA_180.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):18595114,18595134,18599897,18600110,18607318,18607445,18607536,18607652 |
| teRNA_180.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):18595775,18595795,18599897,18600110,18607318,18607445,18607536,18607652 |
| teRNA_180.7 | - | Intergenic | Non-coding | Non-coding | chr1(-):18525851,18525871,18528640,18528998,18607318,18607445,18607536,18607652 |
| teRNA_180.8 | - | Intergenic | Non-coding | Non-coding | chr1(-):18607044,18607064,18607318,18607445,18607536,18607652 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
