TE_179
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR85b |
|---|---|
| TE superfamily | Gypsy |
| TE class | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 2.59 |
| Counts of samples | TCGA_tumor:68; TCGA_normal:7; GTEx:22 |
| TSS | chr1(-):18534031 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_179.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):18524557,18524577,18528640,18528998,18533997,18534032 |
| teRNA_179.2 | - | Intergenic | Non-coding | Non-coding | chr1(-):18496837,18496857,18497496,18497549,18528640,18528998,18533997,18534032 |
| teRNA_179.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):18524557,18524577,18525793,18525871,18528821,18528998,18533997,18534032 |
| teRNA_179.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):18496837,18496857,18528640,18528998,18533997,18534032 |
| teRNA_179.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):18525642,18525662,18528821,18528998,18533997,18534032 |
| teRNA_179.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):18528978,18528998,18533432,18533578,18533997,18534032 |
| teRNA_179.7 | - | Intergenic | Non-coding | Non-coding | chr1(-):18524557,18524577,18528821,18528998,18533432,18533578,18533997,18534032 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
