TE_17866
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | -, ENSG00000286878 |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 347.15 |
| Counts of samples | TCGA_tumor:307; TCGA_normal:0; GTEx:0 |
| TSS | chr8(+):48799544 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_17866.1 | ENSG00000286878 | Chimeric | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48817980,48818147,48821499,48821519 |
| teRNA_17866.2 | ENSG00000286878 | Chimeric | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48816913,48817083,48817980,48818147,48821499,48821519 |
| teRNA_17866.3 | ENSG00000286878 | Chimeric | Other | MNESSCCSTSSPAFGAASVLTLGILIGAVILERHLSTQHVREKPCFPQLCLHCNGPVSVTTAGGTWKRPDTHLGTTANPLCLAWLLSSFPPSFSFSIEHQASFFLTSLTIRVSRGQLLSEHRKA* | chr8(+):48799545,48799587,48806783,48806891,48816913,48817083,48817980,48818143,48821499,48821519 |
| teRNA_17866.4 | - | Intergenic | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48814026,48814099,48816913,48816933 |
| teRNA_17866.5 | ENSG00000286878 | Chimeric | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48817977,48818147,48821499,48821519 |
| teRNA_17866.6 | ENSG00000286878 | Chimeric | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48816913,48817083,48818022,48818147,48821499,48821519 |
| teRNA_17866.7 | ENSG00000286878 | Chimeric | Non-coding | Non-coding | chr8(+):48799545,48799587,48806783,48806891,48816913,48817221,48817980,48818147,48821499,48821519 |
| teRNA_17866.8 | - | Intergenic | Non-coding | Non-coding | chr8(+):48799545,48799587,48802985,48803204,48806783,48806803 |
| teRNA_17866.9 | - | Intergenic | Non-coding | Non-coding | chr8(+):48799545,48799587,48802985,48803204,48806783,48806891,48817980,48818000 |
| teRNA_17866.10 | - | Intergenic | Non-coding | Non-coding | chr8(+):48799545,48799587,48802985,48803208,48806783,48806891,48816913,48816933 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
