TE_175
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MIR |
|---|---|
| TE superfamily | L2-end |
| TE order | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 5.71 |
| Counts of samples | TCGA_tumor:75; TCGA_normal:7; GTEx:7 |
| TSS | chr1(-):17550966 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_175.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543535,17543555,17545327,17547592,17550901,17550967 |
| teRNA_175.2 | - | Intergenic | Non-coding | Non-coding | chr1(-):17545424,17545444,17546110,17547592,17550901,17550967 |
| teRNA_175.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543535,17543555,17545327,17549330,17550901,17550967 |
| teRNA_175.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543535,17543555,17545327,17545444,17546110,17549330,17550901,17550967 |
| teRNA_175.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543201,17543221,17545327,17545444,17550901,17550967 |
| teRNA_175.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543535,17543555,17545327,17545444,17550901,17550967 |
| teRNA_175.7 | - | Intergenic | Non-coding | Non-coding | chr1(-):17543535,17543555,17545327,17545716,17550901,17550967 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
