TE_172
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2 |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 22.54 |
| Counts of samples | TCGA_tumor:79; TCGA_normal:0; GTEx:3 |
| TSS | chr1(-):17377419 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_172.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):17371035,17371055,17373044,17373368,17377281,17377420 |
| teRNA_172.2 | - | Intergenic | Other | MRSDVQNNVFPRLESRLQPGGSPSGCARSHPGRCPSPLPLRLTLSASTEGLGDVIFTVAYVGSDRGHQMVASSFSEITVLATSIKTLPEPWMVKHWHFWGAHLVCPRQSFSMLLRLVLNSWTQAILPPKPPKVLGLQD* | chr1(-):17359699,17359719,17362118,17362210,17373044,17373368,17377281,17377420 |
| teRNA_172.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):17371039,17371059,17373044,17373368,17377281,17377420 |
| teRNA_172.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):17359699,17359719,17373044,17373368,17377281,17377420 |
| teRNA_172.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):17362190,17362210,17363672,17363806,17373044,17373368,17377281,17377420 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
